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nginx-sso/vendor/google.golang.org/genproto/googleapis/genomics/v1/annotations.pb.go
Knut Ahlers 9b3c895c04
Update dependencies 
Signed-off-by: Knut Ahlers <knut@ahlers.me>
2019-04-22 06:44:07 +02:00

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// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/annotations.proto
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import empty "github.com/golang/protobuf/ptypes/empty"
import _struct "github.com/golang/protobuf/ptypes/struct"
import wrappers "github.com/golang/protobuf/ptypes/wrappers"
import _ "google.golang.org/genproto/googleapis/api/annotations"
import status "google.golang.org/genproto/googleapis/rpc/status"
import field_mask "google.golang.org/genproto/protobuf/field_mask"
import (
context "golang.org/x/net/context"
grpc "google.golang.org/grpc"
)
// Reference imports to suppress errors if they are not otherwise used.
var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// When an [Annotation][google.genomics.v1.Annotation] or
// [AnnotationSet][google.genomics.v1.AnnotationSet] is created, if `type` is
// not specified it will be set to `GENERIC`.
type AnnotationType int32
const (
AnnotationType_ANNOTATION_TYPE_UNSPECIFIED AnnotationType = 0
// A `GENERIC` annotation type should be used when no other annotation
// type will suffice. This represents an untyped annotation of the reference
// genome.
AnnotationType_GENERIC AnnotationType = 1
// A `VARIANT` annotation type.
AnnotationType_VARIANT AnnotationType = 2
// A `GENE` annotation type represents the existence of a gene at the
// associated reference coordinates. The start coordinate is typically the
// gene's transcription start site and the end is typically the end of the
// gene's last exon.
AnnotationType_GENE AnnotationType = 3
// A `TRANSCRIPT` annotation type represents the assertion that a
// particular region of the reference genome may be transcribed as RNA.
AnnotationType_TRANSCRIPT AnnotationType = 4
)
var AnnotationType_name = map[int32]string{
0: "ANNOTATION_TYPE_UNSPECIFIED",
1: "GENERIC",
2: "VARIANT",
3: "GENE",
4: "TRANSCRIPT",
}
var AnnotationType_value = map[string]int32{
"ANNOTATION_TYPE_UNSPECIFIED": 0,
"GENERIC": 1,
"VARIANT": 2,
"GENE": 3,
"TRANSCRIPT": 4,
}
func (x AnnotationType) String() string {
return proto.EnumName(AnnotationType_name, int32(x))
}
func (AnnotationType) EnumDescriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{0}
}
type VariantAnnotation_Type int32
const (
VariantAnnotation_TYPE_UNSPECIFIED VariantAnnotation_Type = 0
// `TYPE_OTHER` should be used when no other Type will suffice.
// Further explanation of the variant type may be included in the
// [info][google.genomics.v1.Annotation.info] field.
VariantAnnotation_TYPE_OTHER VariantAnnotation_Type = 1
// `INSERTION` indicates an insertion.
VariantAnnotation_INSERTION VariantAnnotation_Type = 2
// `DELETION` indicates a deletion.
VariantAnnotation_DELETION VariantAnnotation_Type = 3
// `SUBSTITUTION` indicates a block substitution of
// two or more nucleotides.
VariantAnnotation_SUBSTITUTION VariantAnnotation_Type = 4
// `SNP` indicates a single nucleotide polymorphism.
VariantAnnotation_SNP VariantAnnotation_Type = 5
// `STRUCTURAL` indicates a large structural variant,
// including chromosomal fusions, inversions, etc.
VariantAnnotation_STRUCTURAL VariantAnnotation_Type = 6
// `CNV` indicates a variation in copy number.
VariantAnnotation_CNV VariantAnnotation_Type = 7
)
var VariantAnnotation_Type_name = map[int32]string{
0: "TYPE_UNSPECIFIED",
1: "TYPE_OTHER",
2: "INSERTION",
3: "DELETION",
4: "SUBSTITUTION",
5: "SNP",
6: "STRUCTURAL",
7: "CNV",
}
var VariantAnnotation_Type_value = map[string]int32{
"TYPE_UNSPECIFIED": 0,
"TYPE_OTHER": 1,
"INSERTION": 2,
"DELETION": 3,
"SUBSTITUTION": 4,
"SNP": 5,
"STRUCTURAL": 6,
"CNV": 7,
}
func (x VariantAnnotation_Type) String() string {
return proto.EnumName(VariantAnnotation_Type_name, int32(x))
}
func (VariantAnnotation_Type) EnumDescriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{2, 0}
}
type VariantAnnotation_Effect int32
const (
VariantAnnotation_EFFECT_UNSPECIFIED VariantAnnotation_Effect = 0
// `EFFECT_OTHER` should be used when no other Effect
// will suffice.
VariantAnnotation_EFFECT_OTHER VariantAnnotation_Effect = 1
// `FRAMESHIFT` indicates a mutation in which the insertion or
// deletion of nucleotides resulted in a frameshift change.
VariantAnnotation_FRAMESHIFT VariantAnnotation_Effect = 2
// `FRAME_PRESERVING_INDEL` indicates a mutation in which a
// multiple of three nucleotides has been inserted or deleted, resulting
// in no change to the reading frame of the coding sequence.
VariantAnnotation_FRAME_PRESERVING_INDEL VariantAnnotation_Effect = 3
// `SYNONYMOUS_SNP` indicates a single nucleotide polymorphism
// mutation that results in no amino acid change.
VariantAnnotation_SYNONYMOUS_SNP VariantAnnotation_Effect = 4
// `NONSYNONYMOUS_SNP` indicates a single nucleotide
// polymorphism mutation that results in an amino acid change.
VariantAnnotation_NONSYNONYMOUS_SNP VariantAnnotation_Effect = 5
// `STOP_GAIN` indicates a mutation that leads to the creation
// of a stop codon at the variant site. Frameshift mutations creating
// downstream stop codons do not count as `STOP_GAIN`.
VariantAnnotation_STOP_GAIN VariantAnnotation_Effect = 6
// `STOP_LOSS` indicates a mutation that eliminates a
// stop codon at the variant site.
VariantAnnotation_STOP_LOSS VariantAnnotation_Effect = 7
// `SPLICE_SITE_DISRUPTION` indicates that this variant is
// found in a splice site for the associated transcript, and alters the
// normal splicing pattern.
VariantAnnotation_SPLICE_SITE_DISRUPTION VariantAnnotation_Effect = 8
)
var VariantAnnotation_Effect_name = map[int32]string{
0: "EFFECT_UNSPECIFIED",
1: "EFFECT_OTHER",
2: "FRAMESHIFT",
3: "FRAME_PRESERVING_INDEL",
4: "SYNONYMOUS_SNP",
5: "NONSYNONYMOUS_SNP",
6: "STOP_GAIN",
7: "STOP_LOSS",
8: "SPLICE_SITE_DISRUPTION",
}
var VariantAnnotation_Effect_value = map[string]int32{
"EFFECT_UNSPECIFIED": 0,
"EFFECT_OTHER": 1,
"FRAMESHIFT": 2,
"FRAME_PRESERVING_INDEL": 3,
"SYNONYMOUS_SNP": 4,
"NONSYNONYMOUS_SNP": 5,
"STOP_GAIN": 6,
"STOP_LOSS": 7,
"SPLICE_SITE_DISRUPTION": 8,
}
func (x VariantAnnotation_Effect) String() string {
return proto.EnumName(VariantAnnotation_Effect_name, int32(x))
}
func (VariantAnnotation_Effect) EnumDescriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{2, 1}
}
type VariantAnnotation_ClinicalSignificance int32
const (
VariantAnnotation_CLINICAL_SIGNIFICANCE_UNSPECIFIED VariantAnnotation_ClinicalSignificance = 0
// `OTHER` should be used when no other clinical significance
// value will suffice.
VariantAnnotation_CLINICAL_SIGNIFICANCE_OTHER VariantAnnotation_ClinicalSignificance = 1
VariantAnnotation_UNCERTAIN VariantAnnotation_ClinicalSignificance = 2
VariantAnnotation_BENIGN VariantAnnotation_ClinicalSignificance = 3
VariantAnnotation_LIKELY_BENIGN VariantAnnotation_ClinicalSignificance = 4
VariantAnnotation_LIKELY_PATHOGENIC VariantAnnotation_ClinicalSignificance = 5
VariantAnnotation_PATHOGENIC VariantAnnotation_ClinicalSignificance = 6
VariantAnnotation_DRUG_RESPONSE VariantAnnotation_ClinicalSignificance = 7
VariantAnnotation_HISTOCOMPATIBILITY VariantAnnotation_ClinicalSignificance = 8
VariantAnnotation_CONFERS_SENSITIVITY VariantAnnotation_ClinicalSignificance = 9
VariantAnnotation_RISK_FACTOR VariantAnnotation_ClinicalSignificance = 10
VariantAnnotation_ASSOCIATION VariantAnnotation_ClinicalSignificance = 11
VariantAnnotation_PROTECTIVE VariantAnnotation_ClinicalSignificance = 12
// `MULTIPLE_REPORTED` should be used when multiple clinical
// signficances are reported for a variant. The original clinical
// significance values may be provided in the `info` field.
VariantAnnotation_MULTIPLE_REPORTED VariantAnnotation_ClinicalSignificance = 13
)
var VariantAnnotation_ClinicalSignificance_name = map[int32]string{
0: "CLINICAL_SIGNIFICANCE_UNSPECIFIED",
1: "CLINICAL_SIGNIFICANCE_OTHER",
2: "UNCERTAIN",
3: "BENIGN",
4: "LIKELY_BENIGN",
5: "LIKELY_PATHOGENIC",
6: "PATHOGENIC",
7: "DRUG_RESPONSE",
8: "HISTOCOMPATIBILITY",
9: "CONFERS_SENSITIVITY",
10: "RISK_FACTOR",
11: "ASSOCIATION",
12: "PROTECTIVE",
13: "MULTIPLE_REPORTED",
}
var VariantAnnotation_ClinicalSignificance_value = map[string]int32{
"CLINICAL_SIGNIFICANCE_UNSPECIFIED": 0,
"CLINICAL_SIGNIFICANCE_OTHER": 1,
"UNCERTAIN": 2,
"BENIGN": 3,
"LIKELY_BENIGN": 4,
"LIKELY_PATHOGENIC": 5,
"PATHOGENIC": 6,
"DRUG_RESPONSE": 7,
"HISTOCOMPATIBILITY": 8,
"CONFERS_SENSITIVITY": 9,
"RISK_FACTOR": 10,
"ASSOCIATION": 11,
"PROTECTIVE": 12,
"MULTIPLE_REPORTED": 13,
}
func (x VariantAnnotation_ClinicalSignificance) String() string {
return proto.EnumName(VariantAnnotation_ClinicalSignificance_name, int32(x))
}
func (VariantAnnotation_ClinicalSignificance) EnumDescriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{2, 2}
}
// An annotation set is a logical grouping of annotations that share consistent
// type information and provenance. Examples of annotation sets include 'all
// genes from refseq', and 'all variant annotations from ClinVar'.
type AnnotationSet struct {
// The server-generated annotation set ID, unique across all annotation sets.
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The dataset to which this annotation set belongs.
DatasetId string `protobuf:"bytes,2,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
// The ID of the reference set that defines the coordinate space for this
// set's annotations.
ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
// The display name for this annotation set.
Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
// The source URI describing the file from which this annotation set was
// generated, if any.
SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
// The type of annotations contained within this set.
Type AnnotationType `protobuf:"varint,6,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
// A map of additional read alignment information. This must be of the form
// map<string, string[]> (string key mapping to a list of string values).
Info map[string]*_struct.ListValue `protobuf:"bytes,17,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *AnnotationSet) Reset() { *m = AnnotationSet{} }
func (m *AnnotationSet) String() string { return proto.CompactTextString(m) }
func (*AnnotationSet) ProtoMessage() {}
func (*AnnotationSet) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{0}
}
func (m *AnnotationSet) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_AnnotationSet.Unmarshal(m, b)
}
func (m *AnnotationSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_AnnotationSet.Marshal(b, m, deterministic)
}
func (dst *AnnotationSet) XXX_Merge(src proto.Message) {
xxx_messageInfo_AnnotationSet.Merge(dst, src)
}
func (m *AnnotationSet) XXX_Size() int {
return xxx_messageInfo_AnnotationSet.Size(m)
}
func (m *AnnotationSet) XXX_DiscardUnknown() {
xxx_messageInfo_AnnotationSet.DiscardUnknown(m)
}
var xxx_messageInfo_AnnotationSet proto.InternalMessageInfo
func (m *AnnotationSet) GetId() string {
if m != nil {
return m.Id
}
return ""
}
func (m *AnnotationSet) GetDatasetId() string {
if m != nil {
return m.DatasetId
}
return ""
}
func (m *AnnotationSet) GetReferenceSetId() string {
if m != nil {
return m.ReferenceSetId
}
return ""
}
func (m *AnnotationSet) GetName() string {
if m != nil {
return m.Name
}
return ""
}
func (m *AnnotationSet) GetSourceUri() string {
if m != nil {
return m.SourceUri
}
return ""
}
func (m *AnnotationSet) GetType() AnnotationType {
if m != nil {
return m.Type
}
return AnnotationType_ANNOTATION_TYPE_UNSPECIFIED
}
func (m *AnnotationSet) GetInfo() map[string]*_struct.ListValue {
if m != nil {
return m.Info
}
return nil
}
// An annotation describes a region of reference genome. The value of an
// annotation may be one of several canonical types, supplemented by arbitrary
// info tags. An annotation is not inherently associated with a specific
// sample or individual (though a client could choose to use annotations in
// this way). Example canonical annotation types are `GENE` and
// `VARIANT`.
type Annotation struct {
// The server-generated annotation ID, unique across all annotations.
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The annotation set to which this annotation belongs.
AnnotationSetId string `protobuf:"bytes,2,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
// The display name of this annotation.
Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
// The ID of the Google Genomics reference associated with this range.
ReferenceId string `protobuf:"bytes,4,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
// The display name corresponding to the reference specified by
// `referenceId`, for example `chr1`, `1`, or `chrX`.
ReferenceName string `protobuf:"bytes,5,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
// The start position of the range on the reference, 0-based inclusive.
Start int64 `protobuf:"varint,6,opt,name=start,proto3" json:"start,omitempty"`
// The end position of the range on the reference, 0-based exclusive.
End int64 `protobuf:"varint,7,opt,name=end,proto3" json:"end,omitempty"`
// Whether this range refers to the reverse strand, as opposed to the forward
// strand. Note that regardless of this field, the start/end position of the
// range always refer to the forward strand.
ReverseStrand bool `protobuf:"varint,8,opt,name=reverse_strand,json=reverseStrand,proto3" json:"reverse_strand,omitempty"`
// The data type for this annotation. Must match the containing annotation
// set's type.
Type AnnotationType `protobuf:"varint,9,opt,name=type,proto3,enum=google.genomics.v1.AnnotationType" json:"type,omitempty"`
// Types that are valid to be assigned to Value:
// *Annotation_Variant
// *Annotation_Transcript
Value isAnnotation_Value `protobuf_oneof:"value"`
// A map of additional read alignment information. This must be of the form
// map<string, string[]> (string key mapping to a list of string values).
Info map[string]*_struct.ListValue `protobuf:"bytes,12,rep,name=info,proto3" json:"info,omitempty" protobuf_key:"bytes,1,opt,name=key,proto3" protobuf_val:"bytes,2,opt,name=value,proto3"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Annotation) Reset() { *m = Annotation{} }
func (m *Annotation) String() string { return proto.CompactTextString(m) }
func (*Annotation) ProtoMessage() {}
func (*Annotation) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{1}
}
func (m *Annotation) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Annotation.Unmarshal(m, b)
}
func (m *Annotation) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Annotation.Marshal(b, m, deterministic)
}
func (dst *Annotation) XXX_Merge(src proto.Message) {
xxx_messageInfo_Annotation.Merge(dst, src)
}
func (m *Annotation) XXX_Size() int {
return xxx_messageInfo_Annotation.Size(m)
}
func (m *Annotation) XXX_DiscardUnknown() {
xxx_messageInfo_Annotation.DiscardUnknown(m)
}
var xxx_messageInfo_Annotation proto.InternalMessageInfo
func (m *Annotation) GetId() string {
if m != nil {
return m.Id
}
return ""
}
func (m *Annotation) GetAnnotationSetId() string {
if m != nil {
return m.AnnotationSetId
}
return ""
}
func (m *Annotation) GetName() string {
if m != nil {
return m.Name
}
return ""
}
func (m *Annotation) GetReferenceId() string {
if m != nil {
return m.ReferenceId
}
return ""
}
func (m *Annotation) GetReferenceName() string {
if m != nil {
return m.ReferenceName
}
return ""
}
func (m *Annotation) GetStart() int64 {
if m != nil {
return m.Start
}
return 0
}
func (m *Annotation) GetEnd() int64 {
if m != nil {
return m.End
}
return 0
}
func (m *Annotation) GetReverseStrand() bool {
if m != nil {
return m.ReverseStrand
}
return false
}
func (m *Annotation) GetType() AnnotationType {
if m != nil {
return m.Type
}
return AnnotationType_ANNOTATION_TYPE_UNSPECIFIED
}
type isAnnotation_Value interface {
isAnnotation_Value()
}
type Annotation_Variant struct {
Variant *VariantAnnotation `protobuf:"bytes,10,opt,name=variant,proto3,oneof"`
}
type Annotation_Transcript struct {
Transcript *Transcript `protobuf:"bytes,11,opt,name=transcript,proto3,oneof"`
}
func (*Annotation_Variant) isAnnotation_Value() {}
func (*Annotation_Transcript) isAnnotation_Value() {}
func (m *Annotation) GetValue() isAnnotation_Value {
if m != nil {
return m.Value
}
return nil
}
func (m *Annotation) GetVariant() *VariantAnnotation {
if x, ok := m.GetValue().(*Annotation_Variant); ok {
return x.Variant
}
return nil
}
func (m *Annotation) GetTranscript() *Transcript {
if x, ok := m.GetValue().(*Annotation_Transcript); ok {
return x.Transcript
}
return nil
}
func (m *Annotation) GetInfo() map[string]*_struct.ListValue {
if m != nil {
return m.Info
}
return nil
}
// XXX_OneofFuncs is for the internal use of the proto package.
func (*Annotation) XXX_OneofFuncs() (func(msg proto.Message, b *proto.Buffer) error, func(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error), func(msg proto.Message) (n int), []interface{}) {
return _Annotation_OneofMarshaler, _Annotation_OneofUnmarshaler, _Annotation_OneofSizer, []interface{}{
(*Annotation_Variant)(nil),
(*Annotation_Transcript)(nil),
}
}
func _Annotation_OneofMarshaler(msg proto.Message, b *proto.Buffer) error {
m := msg.(*Annotation)
// value
switch x := m.Value.(type) {
case *Annotation_Variant:
b.EncodeVarint(10<<3 | proto.WireBytes)
if err := b.EncodeMessage(x.Variant); err != nil {
return err
}
case *Annotation_Transcript:
b.EncodeVarint(11<<3 | proto.WireBytes)
if err := b.EncodeMessage(x.Transcript); err != nil {
return err
}
case nil:
default:
return fmt.Errorf("Annotation.Value has unexpected type %T", x)
}
return nil
}
func _Annotation_OneofUnmarshaler(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error) {
m := msg.(*Annotation)
switch tag {
case 10: // value.variant
if wire != proto.WireBytes {
return true, proto.ErrInternalBadWireType
}
msg := new(VariantAnnotation)
err := b.DecodeMessage(msg)
m.Value = &Annotation_Variant{msg}
return true, err
case 11: // value.transcript
if wire != proto.WireBytes {
return true, proto.ErrInternalBadWireType
}
msg := new(Transcript)
err := b.DecodeMessage(msg)
m.Value = &Annotation_Transcript{msg}
return true, err
default:
return false, nil
}
}
func _Annotation_OneofSizer(msg proto.Message) (n int) {
m := msg.(*Annotation)
// value
switch x := m.Value.(type) {
case *Annotation_Variant:
s := proto.Size(x.Variant)
n += 1 // tag and wire
n += proto.SizeVarint(uint64(s))
n += s
case *Annotation_Transcript:
s := proto.Size(x.Transcript)
n += 1 // tag and wire
n += proto.SizeVarint(uint64(s))
n += s
case nil:
default:
panic(fmt.Sprintf("proto: unexpected type %T in oneof", x))
}
return n
}
type VariantAnnotation struct {
// Type has been adapted from ClinVar's list of variant types.
Type VariantAnnotation_Type `protobuf:"varint,1,opt,name=type,proto3,enum=google.genomics.v1.VariantAnnotation_Type" json:"type,omitempty"`
// Effect of the variant on the coding sequence.
Effect VariantAnnotation_Effect `protobuf:"varint,2,opt,name=effect,proto3,enum=google.genomics.v1.VariantAnnotation_Effect" json:"effect,omitempty"`
// The alternate allele for this variant. If multiple alternate alleles
// exist at this location, create a separate variant for each one, as they
// may represent distinct conditions.
AlternateBases string `protobuf:"bytes,3,opt,name=alternate_bases,json=alternateBases,proto3" json:"alternate_bases,omitempty"`
// Google annotation ID of the gene affected by this variant. This should
// be provided when the variant is created.
GeneId string `protobuf:"bytes,4,opt,name=gene_id,json=geneId,proto3" json:"gene_id,omitempty"`
// Google annotation IDs of the transcripts affected by this variant. These
// should be provided when the variant is created.
TranscriptIds []string `protobuf:"bytes,5,rep,name=transcript_ids,json=transcriptIds,proto3" json:"transcript_ids,omitempty"`
// The set of conditions associated with this variant.
// A condition describes the way a variant influences human health.
Conditions []*VariantAnnotation_ClinicalCondition `protobuf:"bytes,6,rep,name=conditions,proto3" json:"conditions,omitempty"`
// Describes the clinical significance of a variant.
// It is adapted from the ClinVar controlled vocabulary for clinical
// significance described at:
// http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
ClinicalSignificance VariantAnnotation_ClinicalSignificance `protobuf:"varint,7,opt,name=clinical_significance,json=clinicalSignificance,proto3,enum=google.genomics.v1.VariantAnnotation_ClinicalSignificance" json:"clinical_significance,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *VariantAnnotation) Reset() { *m = VariantAnnotation{} }
func (m *VariantAnnotation) String() string { return proto.CompactTextString(m) }
func (*VariantAnnotation) ProtoMessage() {}
func (*VariantAnnotation) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{2}
}
func (m *VariantAnnotation) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_VariantAnnotation.Unmarshal(m, b)
}
func (m *VariantAnnotation) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_VariantAnnotation.Marshal(b, m, deterministic)
}
func (dst *VariantAnnotation) XXX_Merge(src proto.Message) {
xxx_messageInfo_VariantAnnotation.Merge(dst, src)
}
func (m *VariantAnnotation) XXX_Size() int {
return xxx_messageInfo_VariantAnnotation.Size(m)
}
func (m *VariantAnnotation) XXX_DiscardUnknown() {
xxx_messageInfo_VariantAnnotation.DiscardUnknown(m)
}
var xxx_messageInfo_VariantAnnotation proto.InternalMessageInfo
func (m *VariantAnnotation) GetType() VariantAnnotation_Type {
if m != nil {
return m.Type
}
return VariantAnnotation_TYPE_UNSPECIFIED
}
func (m *VariantAnnotation) GetEffect() VariantAnnotation_Effect {
if m != nil {
return m.Effect
}
return VariantAnnotation_EFFECT_UNSPECIFIED
}
func (m *VariantAnnotation) GetAlternateBases() string {
if m != nil {
return m.AlternateBases
}
return ""
}
func (m *VariantAnnotation) GetGeneId() string {
if m != nil {
return m.GeneId
}
return ""
}
func (m *VariantAnnotation) GetTranscriptIds() []string {
if m != nil {
return m.TranscriptIds
}
return nil
}
func (m *VariantAnnotation) GetConditions() []*VariantAnnotation_ClinicalCondition {
if m != nil {
return m.Conditions
}
return nil
}
func (m *VariantAnnotation) GetClinicalSignificance() VariantAnnotation_ClinicalSignificance {
if m != nil {
return m.ClinicalSignificance
}
return VariantAnnotation_CLINICAL_SIGNIFICANCE_UNSPECIFIED
}
type VariantAnnotation_ClinicalCondition struct {
// A set of names for the condition.
Names []string `protobuf:"bytes,1,rep,name=names,proto3" json:"names,omitempty"`
// The set of external IDs for this condition.
ExternalIds []*ExternalId `protobuf:"bytes,2,rep,name=external_ids,json=externalIds,proto3" json:"external_ids,omitempty"`
// The MedGen concept id associated with this gene.
// Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
ConceptId string `protobuf:"bytes,3,opt,name=concept_id,json=conceptId,proto3" json:"concept_id,omitempty"`
// The OMIM id for this condition.
// Search for these IDs at http://omim.org/
OmimId string `protobuf:"bytes,4,opt,name=omim_id,json=omimId,proto3" json:"omim_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *VariantAnnotation_ClinicalCondition) Reset() { *m = VariantAnnotation_ClinicalCondition{} }
func (m *VariantAnnotation_ClinicalCondition) String() string { return proto.CompactTextString(m) }
func (*VariantAnnotation_ClinicalCondition) ProtoMessage() {}
func (*VariantAnnotation_ClinicalCondition) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{2, 0}
}
func (m *VariantAnnotation_ClinicalCondition) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_VariantAnnotation_ClinicalCondition.Unmarshal(m, b)
}
func (m *VariantAnnotation_ClinicalCondition) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_VariantAnnotation_ClinicalCondition.Marshal(b, m, deterministic)
}
func (dst *VariantAnnotation_ClinicalCondition) XXX_Merge(src proto.Message) {
xxx_messageInfo_VariantAnnotation_ClinicalCondition.Merge(dst, src)
}
func (m *VariantAnnotation_ClinicalCondition) XXX_Size() int {
return xxx_messageInfo_VariantAnnotation_ClinicalCondition.Size(m)
}
func (m *VariantAnnotation_ClinicalCondition) XXX_DiscardUnknown() {
xxx_messageInfo_VariantAnnotation_ClinicalCondition.DiscardUnknown(m)
}
var xxx_messageInfo_VariantAnnotation_ClinicalCondition proto.InternalMessageInfo
func (m *VariantAnnotation_ClinicalCondition) GetNames() []string {
if m != nil {
return m.Names
}
return nil
}
func (m *VariantAnnotation_ClinicalCondition) GetExternalIds() []*ExternalId {
if m != nil {
return m.ExternalIds
}
return nil
}
func (m *VariantAnnotation_ClinicalCondition) GetConceptId() string {
if m != nil {
return m.ConceptId
}
return ""
}
func (m *VariantAnnotation_ClinicalCondition) GetOmimId() string {
if m != nil {
return m.OmimId
}
return ""
}
// A transcript represents the assertion that a particular region of the
// reference genome may be transcribed as RNA.
type Transcript struct {
// The annotation ID of the gene from which this transcript is transcribed.
GeneId string `protobuf:"bytes,1,opt,name=gene_id,json=geneId,proto3" json:"gene_id,omitempty"`
// The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that compose
// this transcript. This field should be unset for genomes where transcript
// splicing does not occur, for example prokaryotes.
//
// Introns are regions of the transcript that are not included in the
// spliced RNA product. Though not explicitly modeled here, intron ranges can
// be deduced; all regions of this transcript that are not exons are introns.
//
// Exonic sequences do not necessarily code for a translational product
// (amino acids). Only the regions of exons bounded by the
// [codingSequence][google.genomics.v1.Transcript.coding_sequence] correspond
// to coding DNA sequence.
//
// Exons are ordered by start position and may not overlap.
Exons []*Transcript_Exon `protobuf:"bytes,2,rep,name=exons,proto3" json:"exons,omitempty"`
// The range of the coding sequence for this transcript, if any. To determine
// the exact ranges of coding sequence, intersect this range with those of the
// [exons][google.genomics.v1.Transcript.exons], if any. If there are any
// [exons][google.genomics.v1.Transcript.exons], the
// [codingSequence][google.genomics.v1.Transcript.coding_sequence] must start
// and end within them.
//
// Note that in some cases, the reference genome will not exactly match the
// observed mRNA transcript e.g. due to variance in the source genome from
// reference. In these cases,
// [exon.frame][google.genomics.v1.Transcript.Exon.frame] will not necessarily
// match the expected reference reading frame and coding exon reference bases
// cannot necessarily be concatenated to produce the original transcript mRNA.
CodingSequence *Transcript_CodingSequence `protobuf:"bytes,3,opt,name=coding_sequence,json=codingSequence,proto3" json:"coding_sequence,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Transcript) Reset() { *m = Transcript{} }
func (m *Transcript) String() string { return proto.CompactTextString(m) }
func (*Transcript) ProtoMessage() {}
func (*Transcript) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{3}
}
func (m *Transcript) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Transcript.Unmarshal(m, b)
}
func (m *Transcript) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Transcript.Marshal(b, m, deterministic)
}
func (dst *Transcript) XXX_Merge(src proto.Message) {
xxx_messageInfo_Transcript.Merge(dst, src)
}
func (m *Transcript) XXX_Size() int {
return xxx_messageInfo_Transcript.Size(m)
}
func (m *Transcript) XXX_DiscardUnknown() {
xxx_messageInfo_Transcript.DiscardUnknown(m)
}
var xxx_messageInfo_Transcript proto.InternalMessageInfo
func (m *Transcript) GetGeneId() string {
if m != nil {
return m.GeneId
}
return ""
}
func (m *Transcript) GetExons() []*Transcript_Exon {
if m != nil {
return m.Exons
}
return nil
}
func (m *Transcript) GetCodingSequence() *Transcript_CodingSequence {
if m != nil {
return m.CodingSequence
}
return nil
}
type Transcript_Exon struct {
// The start position of the exon on this annotation's reference sequence,
// 0-based inclusive. Note that this is relative to the reference start, and
// **not** the containing annotation start.
Start int64 `protobuf:"varint,1,opt,name=start,proto3" json:"start,omitempty"`
// The end position of the exon on this annotation's reference sequence,
// 0-based exclusive. Note that this is relative to the reference start, and
// *not* the containing annotation start.
End int64 `protobuf:"varint,2,opt,name=end,proto3" json:"end,omitempty"`
// The frame of this exon. Contains a value of 0, 1, or 2, which indicates
// the offset of the first coding base of the exon within the reading frame
// of the coding DNA sequence, if any. This field is dependent on the
// strandedness of this annotation (see
// [Annotation.reverse_strand][google.genomics.v1.Annotation.reverse_strand]).
// For forward stranded annotations, this offset is relative to the
// [exon.start][google.genomics.v1.Transcript.Exon.start]. For reverse
// strand annotations, this offset is relative to the
// [exon.end][google.genomics.v1.Transcript.Exon.end] `- 1`.
//
// Unset if this exon does not intersect the coding sequence. Upon creation
// of a transcript, the frame must be populated for all or none of the
// coding exons.
Frame *wrappers.Int32Value `protobuf:"bytes,3,opt,name=frame,proto3" json:"frame,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Transcript_Exon) Reset() { *m = Transcript_Exon{} }
func (m *Transcript_Exon) String() string { return proto.CompactTextString(m) }
func (*Transcript_Exon) ProtoMessage() {}
func (*Transcript_Exon) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{3, 0}
}
func (m *Transcript_Exon) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Transcript_Exon.Unmarshal(m, b)
}
func (m *Transcript_Exon) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Transcript_Exon.Marshal(b, m, deterministic)
}
func (dst *Transcript_Exon) XXX_Merge(src proto.Message) {
xxx_messageInfo_Transcript_Exon.Merge(dst, src)
}
func (m *Transcript_Exon) XXX_Size() int {
return xxx_messageInfo_Transcript_Exon.Size(m)
}
func (m *Transcript_Exon) XXX_DiscardUnknown() {
xxx_messageInfo_Transcript_Exon.DiscardUnknown(m)
}
var xxx_messageInfo_Transcript_Exon proto.InternalMessageInfo
func (m *Transcript_Exon) GetStart() int64 {
if m != nil {
return m.Start
}
return 0
}
func (m *Transcript_Exon) GetEnd() int64 {
if m != nil {
return m.End
}
return 0
}
func (m *Transcript_Exon) GetFrame() *wrappers.Int32Value {
if m != nil {
return m.Frame
}
return nil
}
type Transcript_CodingSequence struct {
// The start of the coding sequence on this annotation's reference sequence,
// 0-based inclusive. Note that this position is relative to the reference
// start, and *not* the containing annotation start.
Start int64 `protobuf:"varint,1,opt,name=start,proto3" json:"start,omitempty"`
// The end of the coding sequence on this annotation's reference sequence,
// 0-based exclusive. Note that this position is relative to the reference
// start, and *not* the containing annotation start.
End int64 `protobuf:"varint,2,opt,name=end,proto3" json:"end,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Transcript_CodingSequence) Reset() { *m = Transcript_CodingSequence{} }
func (m *Transcript_CodingSequence) String() string { return proto.CompactTextString(m) }
func (*Transcript_CodingSequence) ProtoMessage() {}
func (*Transcript_CodingSequence) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{3, 1}
}
func (m *Transcript_CodingSequence) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Transcript_CodingSequence.Unmarshal(m, b)
}
func (m *Transcript_CodingSequence) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Transcript_CodingSequence.Marshal(b, m, deterministic)
}
func (dst *Transcript_CodingSequence) XXX_Merge(src proto.Message) {
xxx_messageInfo_Transcript_CodingSequence.Merge(dst, src)
}
func (m *Transcript_CodingSequence) XXX_Size() int {
return xxx_messageInfo_Transcript_CodingSequence.Size(m)
}
func (m *Transcript_CodingSequence) XXX_DiscardUnknown() {
xxx_messageInfo_Transcript_CodingSequence.DiscardUnknown(m)
}
var xxx_messageInfo_Transcript_CodingSequence proto.InternalMessageInfo
func (m *Transcript_CodingSequence) GetStart() int64 {
if m != nil {
return m.Start
}
return 0
}
func (m *Transcript_CodingSequence) GetEnd() int64 {
if m != nil {
return m.End
}
return 0
}
type ExternalId struct {
// The name of the source of this data.
SourceName string `protobuf:"bytes,1,opt,name=source_name,json=sourceName,proto3" json:"source_name,omitempty"`
// The id used by the source of this data.
Id string `protobuf:"bytes,2,opt,name=id,proto3" json:"id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ExternalId) Reset() { *m = ExternalId{} }
func (m *ExternalId) String() string { return proto.CompactTextString(m) }
func (*ExternalId) ProtoMessage() {}
func (*ExternalId) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{4}
}
func (m *ExternalId) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ExternalId.Unmarshal(m, b)
}
func (m *ExternalId) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ExternalId.Marshal(b, m, deterministic)
}
func (dst *ExternalId) XXX_Merge(src proto.Message) {
xxx_messageInfo_ExternalId.Merge(dst, src)
}
func (m *ExternalId) XXX_Size() int {
return xxx_messageInfo_ExternalId.Size(m)
}
func (m *ExternalId) XXX_DiscardUnknown() {
xxx_messageInfo_ExternalId.DiscardUnknown(m)
}
var xxx_messageInfo_ExternalId proto.InternalMessageInfo
func (m *ExternalId) GetSourceName() string {
if m != nil {
return m.SourceName
}
return ""
}
func (m *ExternalId) GetId() string {
if m != nil {
return m.Id
}
return ""
}
type CreateAnnotationSetRequest struct {
// The annotation set to create.
AnnotationSet *AnnotationSet `protobuf:"bytes,1,opt,name=annotation_set,json=annotationSet,proto3" json:"annotation_set,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *CreateAnnotationSetRequest) Reset() { *m = CreateAnnotationSetRequest{} }
func (m *CreateAnnotationSetRequest) String() string { return proto.CompactTextString(m) }
func (*CreateAnnotationSetRequest) ProtoMessage() {}
func (*CreateAnnotationSetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{5}
}
func (m *CreateAnnotationSetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_CreateAnnotationSetRequest.Unmarshal(m, b)
}
func (m *CreateAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_CreateAnnotationSetRequest.Marshal(b, m, deterministic)
}
func (dst *CreateAnnotationSetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_CreateAnnotationSetRequest.Merge(dst, src)
}
func (m *CreateAnnotationSetRequest) XXX_Size() int {
return xxx_messageInfo_CreateAnnotationSetRequest.Size(m)
}
func (m *CreateAnnotationSetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_CreateAnnotationSetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_CreateAnnotationSetRequest proto.InternalMessageInfo
func (m *CreateAnnotationSetRequest) GetAnnotationSet() *AnnotationSet {
if m != nil {
return m.AnnotationSet
}
return nil
}
type GetAnnotationSetRequest struct {
// The ID of the annotation set to be retrieved.
AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *GetAnnotationSetRequest) Reset() { *m = GetAnnotationSetRequest{} }
func (m *GetAnnotationSetRequest) String() string { return proto.CompactTextString(m) }
func (*GetAnnotationSetRequest) ProtoMessage() {}
func (*GetAnnotationSetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{6}
}
func (m *GetAnnotationSetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_GetAnnotationSetRequest.Unmarshal(m, b)
}
func (m *GetAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_GetAnnotationSetRequest.Marshal(b, m, deterministic)
}
func (dst *GetAnnotationSetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_GetAnnotationSetRequest.Merge(dst, src)
}
func (m *GetAnnotationSetRequest) XXX_Size() int {
return xxx_messageInfo_GetAnnotationSetRequest.Size(m)
}
func (m *GetAnnotationSetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_GetAnnotationSetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_GetAnnotationSetRequest proto.InternalMessageInfo
func (m *GetAnnotationSetRequest) GetAnnotationSetId() string {
if m != nil {
return m.AnnotationSetId
}
return ""
}
type UpdateAnnotationSetRequest struct {
// The ID of the annotation set to be updated.
AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
// The new annotation set.
AnnotationSet *AnnotationSet `protobuf:"bytes,2,opt,name=annotation_set,json=annotationSet,proto3" json:"annotation_set,omitempty"`
// An optional mask specifying which fields to update. Mutable fields are
// [name][google.genomics.v1.AnnotationSet.name],
// [source_uri][google.genomics.v1.AnnotationSet.source_uri], and
// [info][google.genomics.v1.AnnotationSet.info]. If unspecified, all
// mutable fields will be updated.
UpdateMask *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *UpdateAnnotationSetRequest) Reset() { *m = UpdateAnnotationSetRequest{} }
func (m *UpdateAnnotationSetRequest) String() string { return proto.CompactTextString(m) }
func (*UpdateAnnotationSetRequest) ProtoMessage() {}
func (*UpdateAnnotationSetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{7}
}
func (m *UpdateAnnotationSetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_UpdateAnnotationSetRequest.Unmarshal(m, b)
}
func (m *UpdateAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_UpdateAnnotationSetRequest.Marshal(b, m, deterministic)
}
func (dst *UpdateAnnotationSetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_UpdateAnnotationSetRequest.Merge(dst, src)
}
func (m *UpdateAnnotationSetRequest) XXX_Size() int {
return xxx_messageInfo_UpdateAnnotationSetRequest.Size(m)
}
func (m *UpdateAnnotationSetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_UpdateAnnotationSetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_UpdateAnnotationSetRequest proto.InternalMessageInfo
func (m *UpdateAnnotationSetRequest) GetAnnotationSetId() string {
if m != nil {
return m.AnnotationSetId
}
return ""
}
func (m *UpdateAnnotationSetRequest) GetAnnotationSet() *AnnotationSet {
if m != nil {
return m.AnnotationSet
}
return nil
}
func (m *UpdateAnnotationSetRequest) GetUpdateMask() *field_mask.FieldMask {
if m != nil {
return m.UpdateMask
}
return nil
}
type DeleteAnnotationSetRequest struct {
// The ID of the annotation set to be deleted.
AnnotationSetId string `protobuf:"bytes,1,opt,name=annotation_set_id,json=annotationSetId,proto3" json:"annotation_set_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *DeleteAnnotationSetRequest) Reset() { *m = DeleteAnnotationSetRequest{} }
func (m *DeleteAnnotationSetRequest) String() string { return proto.CompactTextString(m) }
func (*DeleteAnnotationSetRequest) ProtoMessage() {}
func (*DeleteAnnotationSetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{8}
}
func (m *DeleteAnnotationSetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_DeleteAnnotationSetRequest.Unmarshal(m, b)
}
func (m *DeleteAnnotationSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_DeleteAnnotationSetRequest.Marshal(b, m, deterministic)
}
func (dst *DeleteAnnotationSetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_DeleteAnnotationSetRequest.Merge(dst, src)
}
func (m *DeleteAnnotationSetRequest) XXX_Size() int {
return xxx_messageInfo_DeleteAnnotationSetRequest.Size(m)
}
func (m *DeleteAnnotationSetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_DeleteAnnotationSetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_DeleteAnnotationSetRequest proto.InternalMessageInfo
func (m *DeleteAnnotationSetRequest) GetAnnotationSetId() string {
if m != nil {
return m.AnnotationSetId
}
return ""
}
type SearchAnnotationSetsRequest struct {
// Required. The dataset IDs to search within. Caller must have `READ` access
// to these datasets.
DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
// If specified, only annotation sets associated with the given reference set
// are returned.
ReferenceSetId string `protobuf:"bytes,2,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
// Only return annotations sets for which a substring of the name matches this
// string (case insensitive).
Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
// If specified, only annotation sets that have any of these types are
// returned.
Types []AnnotationType `protobuf:"varint,4,rep,packed,name=types,proto3,enum=google.genomics.v1.AnnotationType" json:"types,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,5,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
// The maximum number of results to return in a single page. If unspecified,
// defaults to 128. The maximum value is 1024.
PageSize int32 `protobuf:"varint,6,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchAnnotationSetsRequest) Reset() { *m = SearchAnnotationSetsRequest{} }
func (m *SearchAnnotationSetsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchAnnotationSetsRequest) ProtoMessage() {}
func (*SearchAnnotationSetsRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{9}
}
func (m *SearchAnnotationSetsRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchAnnotationSetsRequest.Unmarshal(m, b)
}
func (m *SearchAnnotationSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchAnnotationSetsRequest.Marshal(b, m, deterministic)
}
func (dst *SearchAnnotationSetsRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchAnnotationSetsRequest.Merge(dst, src)
}
func (m *SearchAnnotationSetsRequest) XXX_Size() int {
return xxx_messageInfo_SearchAnnotationSetsRequest.Size(m)
}
func (m *SearchAnnotationSetsRequest) XXX_DiscardUnknown() {
xxx_messageInfo_SearchAnnotationSetsRequest.DiscardUnknown(m)
}
var xxx_messageInfo_SearchAnnotationSetsRequest proto.InternalMessageInfo
func (m *SearchAnnotationSetsRequest) GetDatasetIds() []string {
if m != nil {
return m.DatasetIds
}
return nil
}
func (m *SearchAnnotationSetsRequest) GetReferenceSetId() string {
if m != nil {
return m.ReferenceSetId
}
return ""
}
func (m *SearchAnnotationSetsRequest) GetName() string {
if m != nil {
return m.Name
}
return ""
}
func (m *SearchAnnotationSetsRequest) GetTypes() []AnnotationType {
if m != nil {
return m.Types
}
return nil
}
func (m *SearchAnnotationSetsRequest) GetPageToken() string {
if m != nil {
return m.PageToken
}
return ""
}
func (m *SearchAnnotationSetsRequest) GetPageSize() int32 {
if m != nil {
return m.PageSize
}
return 0
}
type SearchAnnotationSetsResponse struct {
// The matching annotation sets.
AnnotationSets []*AnnotationSet `protobuf:"bytes,1,rep,name=annotation_sets,json=annotationSets,proto3" json:"annotation_sets,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchAnnotationSetsResponse) Reset() { *m = SearchAnnotationSetsResponse{} }
func (m *SearchAnnotationSetsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchAnnotationSetsResponse) ProtoMessage() {}
func (*SearchAnnotationSetsResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{10}
}
func (m *SearchAnnotationSetsResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchAnnotationSetsResponse.Unmarshal(m, b)
}
func (m *SearchAnnotationSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchAnnotationSetsResponse.Marshal(b, m, deterministic)
}
func (dst *SearchAnnotationSetsResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchAnnotationSetsResponse.Merge(dst, src)
}
func (m *SearchAnnotationSetsResponse) XXX_Size() int {
return xxx_messageInfo_SearchAnnotationSetsResponse.Size(m)
}
func (m *SearchAnnotationSetsResponse) XXX_DiscardUnknown() {
xxx_messageInfo_SearchAnnotationSetsResponse.DiscardUnknown(m)
}
var xxx_messageInfo_SearchAnnotationSetsResponse proto.InternalMessageInfo
func (m *SearchAnnotationSetsResponse) GetAnnotationSets() []*AnnotationSet {
if m != nil {
return m.AnnotationSets
}
return nil
}
func (m *SearchAnnotationSetsResponse) GetNextPageToken() string {
if m != nil {
return m.NextPageToken
}
return ""
}
type CreateAnnotationRequest struct {
// The annotation to be created.
Annotation *Annotation `protobuf:"bytes,1,opt,name=annotation,proto3" json:"annotation,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *CreateAnnotationRequest) Reset() { *m = CreateAnnotationRequest{} }
func (m *CreateAnnotationRequest) String() string { return proto.CompactTextString(m) }
func (*CreateAnnotationRequest) ProtoMessage() {}
func (*CreateAnnotationRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{11}
}
func (m *CreateAnnotationRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_CreateAnnotationRequest.Unmarshal(m, b)
}
func (m *CreateAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_CreateAnnotationRequest.Marshal(b, m, deterministic)
}
func (dst *CreateAnnotationRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_CreateAnnotationRequest.Merge(dst, src)
}
func (m *CreateAnnotationRequest) XXX_Size() int {
return xxx_messageInfo_CreateAnnotationRequest.Size(m)
}
func (m *CreateAnnotationRequest) XXX_DiscardUnknown() {
xxx_messageInfo_CreateAnnotationRequest.DiscardUnknown(m)
}
var xxx_messageInfo_CreateAnnotationRequest proto.InternalMessageInfo
func (m *CreateAnnotationRequest) GetAnnotation() *Annotation {
if m != nil {
return m.Annotation
}
return nil
}
type BatchCreateAnnotationsRequest struct {
// The annotations to be created. At most 4096 can be specified in a single
// request.
Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
// A unique request ID which enables the server to detect duplicated requests.
// If provided, duplicated requests will result in the same response; if not
// provided, duplicated requests may result in duplicated data. For a given
// annotation set, callers should not reuse `request_id`s when writing
// different batches of annotations - behavior in this case is undefined.
// A common approach is to use a UUID. For batch jobs where worker crashes are
// a possibility, consider using some unique variant of a worker or run ID.
RequestId string `protobuf:"bytes,2,opt,name=request_id,json=requestId,proto3" json:"request_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *BatchCreateAnnotationsRequest) Reset() { *m = BatchCreateAnnotationsRequest{} }
func (m *BatchCreateAnnotationsRequest) String() string { return proto.CompactTextString(m) }
func (*BatchCreateAnnotationsRequest) ProtoMessage() {}
func (*BatchCreateAnnotationsRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{12}
}
func (m *BatchCreateAnnotationsRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_BatchCreateAnnotationsRequest.Unmarshal(m, b)
}
func (m *BatchCreateAnnotationsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_BatchCreateAnnotationsRequest.Marshal(b, m, deterministic)
}
func (dst *BatchCreateAnnotationsRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_BatchCreateAnnotationsRequest.Merge(dst, src)
}
func (m *BatchCreateAnnotationsRequest) XXX_Size() int {
return xxx_messageInfo_BatchCreateAnnotationsRequest.Size(m)
}
func (m *BatchCreateAnnotationsRequest) XXX_DiscardUnknown() {
xxx_messageInfo_BatchCreateAnnotationsRequest.DiscardUnknown(m)
}
var xxx_messageInfo_BatchCreateAnnotationsRequest proto.InternalMessageInfo
func (m *BatchCreateAnnotationsRequest) GetAnnotations() []*Annotation {
if m != nil {
return m.Annotations
}
return nil
}
func (m *BatchCreateAnnotationsRequest) GetRequestId() string {
if m != nil {
return m.RequestId
}
return ""
}
type BatchCreateAnnotationsResponse struct {
// The resulting per-annotation entries, ordered consistently with the
// original request.
Entries []*BatchCreateAnnotationsResponse_Entry `protobuf:"bytes,1,rep,name=entries,proto3" json:"entries,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *BatchCreateAnnotationsResponse) Reset() { *m = BatchCreateAnnotationsResponse{} }
func (m *BatchCreateAnnotationsResponse) String() string { return proto.CompactTextString(m) }
func (*BatchCreateAnnotationsResponse) ProtoMessage() {}
func (*BatchCreateAnnotationsResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{13}
}
func (m *BatchCreateAnnotationsResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_BatchCreateAnnotationsResponse.Unmarshal(m, b)
}
func (m *BatchCreateAnnotationsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_BatchCreateAnnotationsResponse.Marshal(b, m, deterministic)
}
func (dst *BatchCreateAnnotationsResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_BatchCreateAnnotationsResponse.Merge(dst, src)
}
func (m *BatchCreateAnnotationsResponse) XXX_Size() int {
return xxx_messageInfo_BatchCreateAnnotationsResponse.Size(m)
}
func (m *BatchCreateAnnotationsResponse) XXX_DiscardUnknown() {
xxx_messageInfo_BatchCreateAnnotationsResponse.DiscardUnknown(m)
}
var xxx_messageInfo_BatchCreateAnnotationsResponse proto.InternalMessageInfo
func (m *BatchCreateAnnotationsResponse) GetEntries() []*BatchCreateAnnotationsResponse_Entry {
if m != nil {
return m.Entries
}
return nil
}
type BatchCreateAnnotationsResponse_Entry struct {
// The creation status.
Status *status.Status `protobuf:"bytes,1,opt,name=status,proto3" json:"status,omitempty"`
// The created annotation, if creation was successful.
Annotation *Annotation `protobuf:"bytes,2,opt,name=annotation,proto3" json:"annotation,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *BatchCreateAnnotationsResponse_Entry) Reset() { *m = BatchCreateAnnotationsResponse_Entry{} }
func (m *BatchCreateAnnotationsResponse_Entry) String() string { return proto.CompactTextString(m) }
func (*BatchCreateAnnotationsResponse_Entry) ProtoMessage() {}
func (*BatchCreateAnnotationsResponse_Entry) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{13, 0}
}
func (m *BatchCreateAnnotationsResponse_Entry) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.Unmarshal(m, b)
}
func (m *BatchCreateAnnotationsResponse_Entry) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.Marshal(b, m, deterministic)
}
func (dst *BatchCreateAnnotationsResponse_Entry) XXX_Merge(src proto.Message) {
xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.Merge(dst, src)
}
func (m *BatchCreateAnnotationsResponse_Entry) XXX_Size() int {
return xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.Size(m)
}
func (m *BatchCreateAnnotationsResponse_Entry) XXX_DiscardUnknown() {
xxx_messageInfo_BatchCreateAnnotationsResponse_Entry.DiscardUnknown(m)
}
var xxx_messageInfo_BatchCreateAnnotationsResponse_Entry proto.InternalMessageInfo
func (m *BatchCreateAnnotationsResponse_Entry) GetStatus() *status.Status {
if m != nil {
return m.Status
}
return nil
}
func (m *BatchCreateAnnotationsResponse_Entry) GetAnnotation() *Annotation {
if m != nil {
return m.Annotation
}
return nil
}
type GetAnnotationRequest struct {
// The ID of the annotation to be retrieved.
AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *GetAnnotationRequest) Reset() { *m = GetAnnotationRequest{} }
func (m *GetAnnotationRequest) String() string { return proto.CompactTextString(m) }
func (*GetAnnotationRequest) ProtoMessage() {}
func (*GetAnnotationRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{14}
}
func (m *GetAnnotationRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_GetAnnotationRequest.Unmarshal(m, b)
}
func (m *GetAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_GetAnnotationRequest.Marshal(b, m, deterministic)
}
func (dst *GetAnnotationRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_GetAnnotationRequest.Merge(dst, src)
}
func (m *GetAnnotationRequest) XXX_Size() int {
return xxx_messageInfo_GetAnnotationRequest.Size(m)
}
func (m *GetAnnotationRequest) XXX_DiscardUnknown() {
xxx_messageInfo_GetAnnotationRequest.DiscardUnknown(m)
}
var xxx_messageInfo_GetAnnotationRequest proto.InternalMessageInfo
func (m *GetAnnotationRequest) GetAnnotationId() string {
if m != nil {
return m.AnnotationId
}
return ""
}
type UpdateAnnotationRequest struct {
// The ID of the annotation to be updated.
AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
// The new annotation.
Annotation *Annotation `protobuf:"bytes,2,opt,name=annotation,proto3" json:"annotation,omitempty"`
// An optional mask specifying which fields to update. Mutable fields are
// [name][google.genomics.v1.Annotation.name],
// [variant][google.genomics.v1.Annotation.variant],
// [transcript][google.genomics.v1.Annotation.transcript], and
// [info][google.genomics.v1.Annotation.info]. If unspecified, all mutable
// fields will be updated.
UpdateMask *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *UpdateAnnotationRequest) Reset() { *m = UpdateAnnotationRequest{} }
func (m *UpdateAnnotationRequest) String() string { return proto.CompactTextString(m) }
func (*UpdateAnnotationRequest) ProtoMessage() {}
func (*UpdateAnnotationRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{15}
}
func (m *UpdateAnnotationRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_UpdateAnnotationRequest.Unmarshal(m, b)
}
func (m *UpdateAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_UpdateAnnotationRequest.Marshal(b, m, deterministic)
}
func (dst *UpdateAnnotationRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_UpdateAnnotationRequest.Merge(dst, src)
}
func (m *UpdateAnnotationRequest) XXX_Size() int {
return xxx_messageInfo_UpdateAnnotationRequest.Size(m)
}
func (m *UpdateAnnotationRequest) XXX_DiscardUnknown() {
xxx_messageInfo_UpdateAnnotationRequest.DiscardUnknown(m)
}
var xxx_messageInfo_UpdateAnnotationRequest proto.InternalMessageInfo
func (m *UpdateAnnotationRequest) GetAnnotationId() string {
if m != nil {
return m.AnnotationId
}
return ""
}
func (m *UpdateAnnotationRequest) GetAnnotation() *Annotation {
if m != nil {
return m.Annotation
}
return nil
}
func (m *UpdateAnnotationRequest) GetUpdateMask() *field_mask.FieldMask {
if m != nil {
return m.UpdateMask
}
return nil
}
type DeleteAnnotationRequest struct {
// The ID of the annotation to be deleted.
AnnotationId string `protobuf:"bytes,1,opt,name=annotation_id,json=annotationId,proto3" json:"annotation_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *DeleteAnnotationRequest) Reset() { *m = DeleteAnnotationRequest{} }
func (m *DeleteAnnotationRequest) String() string { return proto.CompactTextString(m) }
func (*DeleteAnnotationRequest) ProtoMessage() {}
func (*DeleteAnnotationRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{16}
}
func (m *DeleteAnnotationRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_DeleteAnnotationRequest.Unmarshal(m, b)
}
func (m *DeleteAnnotationRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_DeleteAnnotationRequest.Marshal(b, m, deterministic)
}
func (dst *DeleteAnnotationRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_DeleteAnnotationRequest.Merge(dst, src)
}
func (m *DeleteAnnotationRequest) XXX_Size() int {
return xxx_messageInfo_DeleteAnnotationRequest.Size(m)
}
func (m *DeleteAnnotationRequest) XXX_DiscardUnknown() {
xxx_messageInfo_DeleteAnnotationRequest.DiscardUnknown(m)
}
var xxx_messageInfo_DeleteAnnotationRequest proto.InternalMessageInfo
func (m *DeleteAnnotationRequest) GetAnnotationId() string {
if m != nil {
return m.AnnotationId
}
return ""
}
type SearchAnnotationsRequest struct {
// Required. The annotation sets to search within. The caller must have
// `READ` access to these annotation sets.
// All queried annotation sets must have the same type.
AnnotationSetIds []string `protobuf:"bytes,1,rep,name=annotation_set_ids,json=annotationSetIds,proto3" json:"annotation_set_ids,omitempty"`
// Required. `reference_id` or `reference_name` must be set.
//
// Types that are valid to be assigned to Reference:
// *SearchAnnotationsRequest_ReferenceId
// *SearchAnnotationsRequest_ReferenceName
Reference isSearchAnnotationsRequest_Reference `protobuf_oneof:"reference"`
// The start position of the range on the reference, 0-based inclusive. If
// specified,
// [referenceId][google.genomics.v1.SearchAnnotationsRequest.reference_id] or
// [referenceName][google.genomics.v1.SearchAnnotationsRequest.reference_name]
// must be specified. Defaults to 0.
Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
// The end position of the range on the reference, 0-based exclusive. If
// [referenceId][google.genomics.v1.SearchAnnotationsRequest.reference_id] or
// [referenceName][google.genomics.v1.SearchAnnotationsRequest.reference_name]
// must be specified, Defaults to the length of the reference.
End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,6,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
// The maximum number of results to return in a single page. If unspecified,
// defaults to 256. The maximum value is 2048.
PageSize int32 `protobuf:"varint,7,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchAnnotationsRequest) Reset() { *m = SearchAnnotationsRequest{} }
func (m *SearchAnnotationsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchAnnotationsRequest) ProtoMessage() {}
func (*SearchAnnotationsRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{17}
}
func (m *SearchAnnotationsRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchAnnotationsRequest.Unmarshal(m, b)
}
func (m *SearchAnnotationsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchAnnotationsRequest.Marshal(b, m, deterministic)
}
func (dst *SearchAnnotationsRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchAnnotationsRequest.Merge(dst, src)
}
func (m *SearchAnnotationsRequest) XXX_Size() int {
return xxx_messageInfo_SearchAnnotationsRequest.Size(m)
}
func (m *SearchAnnotationsRequest) XXX_DiscardUnknown() {
xxx_messageInfo_SearchAnnotationsRequest.DiscardUnknown(m)
}
var xxx_messageInfo_SearchAnnotationsRequest proto.InternalMessageInfo
func (m *SearchAnnotationsRequest) GetAnnotationSetIds() []string {
if m != nil {
return m.AnnotationSetIds
}
return nil
}
type isSearchAnnotationsRequest_Reference interface {
isSearchAnnotationsRequest_Reference()
}
type SearchAnnotationsRequest_ReferenceId struct {
ReferenceId string `protobuf:"bytes,2,opt,name=reference_id,json=referenceId,proto3,oneof"`
}
type SearchAnnotationsRequest_ReferenceName struct {
ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3,oneof"`
}
func (*SearchAnnotationsRequest_ReferenceId) isSearchAnnotationsRequest_Reference() {}
func (*SearchAnnotationsRequest_ReferenceName) isSearchAnnotationsRequest_Reference() {}
func (m *SearchAnnotationsRequest) GetReference() isSearchAnnotationsRequest_Reference {
if m != nil {
return m.Reference
}
return nil
}
func (m *SearchAnnotationsRequest) GetReferenceId() string {
if x, ok := m.GetReference().(*SearchAnnotationsRequest_ReferenceId); ok {
return x.ReferenceId
}
return ""
}
func (m *SearchAnnotationsRequest) GetReferenceName() string {
if x, ok := m.GetReference().(*SearchAnnotationsRequest_ReferenceName); ok {
return x.ReferenceName
}
return ""
}
func (m *SearchAnnotationsRequest) GetStart() int64 {
if m != nil {
return m.Start
}
return 0
}
func (m *SearchAnnotationsRequest) GetEnd() int64 {
if m != nil {
return m.End
}
return 0
}
func (m *SearchAnnotationsRequest) GetPageToken() string {
if m != nil {
return m.PageToken
}
return ""
}
func (m *SearchAnnotationsRequest) GetPageSize() int32 {
if m != nil {
return m.PageSize
}
return 0
}
// XXX_OneofFuncs is for the internal use of the proto package.
func (*SearchAnnotationsRequest) XXX_OneofFuncs() (func(msg proto.Message, b *proto.Buffer) error, func(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error), func(msg proto.Message) (n int), []interface{}) {
return _SearchAnnotationsRequest_OneofMarshaler, _SearchAnnotationsRequest_OneofUnmarshaler, _SearchAnnotationsRequest_OneofSizer, []interface{}{
(*SearchAnnotationsRequest_ReferenceId)(nil),
(*SearchAnnotationsRequest_ReferenceName)(nil),
}
}
func _SearchAnnotationsRequest_OneofMarshaler(msg proto.Message, b *proto.Buffer) error {
m := msg.(*SearchAnnotationsRequest)
// reference
switch x := m.Reference.(type) {
case *SearchAnnotationsRequest_ReferenceId:
b.EncodeVarint(2<<3 | proto.WireBytes)
b.EncodeStringBytes(x.ReferenceId)
case *SearchAnnotationsRequest_ReferenceName:
b.EncodeVarint(3<<3 | proto.WireBytes)
b.EncodeStringBytes(x.ReferenceName)
case nil:
default:
return fmt.Errorf("SearchAnnotationsRequest.Reference has unexpected type %T", x)
}
return nil
}
func _SearchAnnotationsRequest_OneofUnmarshaler(msg proto.Message, tag, wire int, b *proto.Buffer) (bool, error) {
m := msg.(*SearchAnnotationsRequest)
switch tag {
case 2: // reference.reference_id
if wire != proto.WireBytes {
return true, proto.ErrInternalBadWireType
}
x, err := b.DecodeStringBytes()
m.Reference = &SearchAnnotationsRequest_ReferenceId{x}
return true, err
case 3: // reference.reference_name
if wire != proto.WireBytes {
return true, proto.ErrInternalBadWireType
}
x, err := b.DecodeStringBytes()
m.Reference = &SearchAnnotationsRequest_ReferenceName{x}
return true, err
default:
return false, nil
}
}
func _SearchAnnotationsRequest_OneofSizer(msg proto.Message) (n int) {
m := msg.(*SearchAnnotationsRequest)
// reference
switch x := m.Reference.(type) {
case *SearchAnnotationsRequest_ReferenceId:
n += 1 // tag and wire
n += proto.SizeVarint(uint64(len(x.ReferenceId)))
n += len(x.ReferenceId)
case *SearchAnnotationsRequest_ReferenceName:
n += 1 // tag and wire
n += proto.SizeVarint(uint64(len(x.ReferenceName)))
n += len(x.ReferenceName)
case nil:
default:
panic(fmt.Sprintf("proto: unexpected type %T in oneof", x))
}
return n
}
type SearchAnnotationsResponse struct {
// The matching annotations.
Annotations []*Annotation `protobuf:"bytes,1,rep,name=annotations,proto3" json:"annotations,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchAnnotationsResponse) Reset() { *m = SearchAnnotationsResponse{} }
func (m *SearchAnnotationsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchAnnotationsResponse) ProtoMessage() {}
func (*SearchAnnotationsResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_annotations_1d574ef120ac57f0, []int{18}
}
func (m *SearchAnnotationsResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchAnnotationsResponse.Unmarshal(m, b)
}
func (m *SearchAnnotationsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchAnnotationsResponse.Marshal(b, m, deterministic)
}
func (dst *SearchAnnotationsResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchAnnotationsResponse.Merge(dst, src)
}
func (m *SearchAnnotationsResponse) XXX_Size() int {
return xxx_messageInfo_SearchAnnotationsResponse.Size(m)
}
func (m *SearchAnnotationsResponse) XXX_DiscardUnknown() {
xxx_messageInfo_SearchAnnotationsResponse.DiscardUnknown(m)
}
var xxx_messageInfo_SearchAnnotationsResponse proto.InternalMessageInfo
func (m *SearchAnnotationsResponse) GetAnnotations() []*Annotation {
if m != nil {
return m.Annotations
}
return nil
}
func (m *SearchAnnotationsResponse) GetNextPageToken() string {
if m != nil {
return m.NextPageToken
}
return ""
}
func init() {
proto.RegisterType((*AnnotationSet)(nil), "google.genomics.v1.AnnotationSet")
proto.RegisterMapType((map[string]*_struct.ListValue)(nil), "google.genomics.v1.AnnotationSet.InfoEntry")
proto.RegisterType((*Annotation)(nil), "google.genomics.v1.Annotation")
proto.RegisterMapType((map[string]*_struct.ListValue)(nil), "google.genomics.v1.Annotation.InfoEntry")
proto.RegisterType((*VariantAnnotation)(nil), "google.genomics.v1.VariantAnnotation")
proto.RegisterType((*VariantAnnotation_ClinicalCondition)(nil), "google.genomics.v1.VariantAnnotation.ClinicalCondition")
proto.RegisterType((*Transcript)(nil), "google.genomics.v1.Transcript")
proto.RegisterType((*Transcript_Exon)(nil), "google.genomics.v1.Transcript.Exon")
proto.RegisterType((*Transcript_CodingSequence)(nil), "google.genomics.v1.Transcript.CodingSequence")
proto.RegisterType((*ExternalId)(nil), "google.genomics.v1.ExternalId")
proto.RegisterType((*CreateAnnotationSetRequest)(nil), "google.genomics.v1.CreateAnnotationSetRequest")
proto.RegisterType((*GetAnnotationSetRequest)(nil), "google.genomics.v1.GetAnnotationSetRequest")
proto.RegisterType((*UpdateAnnotationSetRequest)(nil), "google.genomics.v1.UpdateAnnotationSetRequest")
proto.RegisterType((*DeleteAnnotationSetRequest)(nil), "google.genomics.v1.DeleteAnnotationSetRequest")
proto.RegisterType((*SearchAnnotationSetsRequest)(nil), "google.genomics.v1.SearchAnnotationSetsRequest")
proto.RegisterType((*SearchAnnotationSetsResponse)(nil), "google.genomics.v1.SearchAnnotationSetsResponse")
proto.RegisterType((*CreateAnnotationRequest)(nil), "google.genomics.v1.CreateAnnotationRequest")
proto.RegisterType((*BatchCreateAnnotationsRequest)(nil), "google.genomics.v1.BatchCreateAnnotationsRequest")
proto.RegisterType((*BatchCreateAnnotationsResponse)(nil), "google.genomics.v1.BatchCreateAnnotationsResponse")
proto.RegisterType((*BatchCreateAnnotationsResponse_Entry)(nil), "google.genomics.v1.BatchCreateAnnotationsResponse.Entry")
proto.RegisterType((*GetAnnotationRequest)(nil), "google.genomics.v1.GetAnnotationRequest")
proto.RegisterType((*UpdateAnnotationRequest)(nil), "google.genomics.v1.UpdateAnnotationRequest")
proto.RegisterType((*DeleteAnnotationRequest)(nil), "google.genomics.v1.DeleteAnnotationRequest")
proto.RegisterType((*SearchAnnotationsRequest)(nil), "google.genomics.v1.SearchAnnotationsRequest")
proto.RegisterType((*SearchAnnotationsResponse)(nil), "google.genomics.v1.SearchAnnotationsResponse")
proto.RegisterEnum("google.genomics.v1.AnnotationType", AnnotationType_name, AnnotationType_value)
proto.RegisterEnum("google.genomics.v1.VariantAnnotation_Type", VariantAnnotation_Type_name, VariantAnnotation_Type_value)
proto.RegisterEnum("google.genomics.v1.VariantAnnotation_Effect", VariantAnnotation_Effect_name, VariantAnnotation_Effect_value)
proto.RegisterEnum("google.genomics.v1.VariantAnnotation_ClinicalSignificance", VariantAnnotation_ClinicalSignificance_name, VariantAnnotation_ClinicalSignificance_value)
}
// Reference imports to suppress errors if they are not otherwise used.
var _ context.Context
var _ grpc.ClientConn
// This is a compile-time assertion to ensure that this generated file
// is compatible with the grpc package it is being compiled against.
const _ = grpc.SupportPackageIsVersion4
// AnnotationServiceV1Client is the client API for AnnotationServiceV1 service.
//
// For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
type AnnotationServiceV1Client interface {
// Creates a new annotation set. Caller must have WRITE permission for the
// associated dataset.
//
// The following fields are required:
//
// * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
// * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
//
// All other fields may be optionally specified, unless documented as being
// server-generated (for example, the `id` field).
CreateAnnotationSet(ctx context.Context, in *CreateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
// Gets an annotation set. Caller must have READ permission for
// the associated dataset.
GetAnnotationSet(ctx context.Context, in *GetAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
// Updates an annotation set. The update must respect all mutability
// restrictions and other invariants described on the annotation set resource.
// Caller must have WRITE permission for the associated dataset.
UpdateAnnotationSet(ctx context.Context, in *UpdateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error)
// Deletes an annotation set. Caller must have WRITE permission
// for the associated annotation set.
DeleteAnnotationSet(ctx context.Context, in *DeleteAnnotationSetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
// Searches for annotation sets that match the given criteria. Annotation sets
// are returned in an unspecified order. This order is consistent, such that
// two queries for the same content (regardless of page size) yield annotation
// sets in the same order across their respective streams of paginated
// responses. Caller must have READ permission for the queried datasets.
SearchAnnotationSets(ctx context.Context, in *SearchAnnotationSetsRequest, opts ...grpc.CallOption) (*SearchAnnotationSetsResponse, error)
// Creates a new annotation. Caller must have WRITE permission
// for the associated annotation set.
//
// The following fields are required:
//
// * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
// * [referenceName][google.genomics.v1.Annotation.reference_name] or
// [referenceId][google.genomics.v1.Annotation.reference_id]
//
// ### Transcripts
//
// For annotations of type TRANSCRIPT, the following fields of
// [transcript][google.genomics.v1.Annotation.transcript] must be provided:
//
// * [exons.start][google.genomics.v1.Transcript.Exon.start]
// * [exons.end][google.genomics.v1.Transcript.Exon.end]
//
// All other fields may be optionally specified, unless documented as being
// server-generated (for example, the `id` field). The annotated
// range must be no longer than 100Mbp (mega base pairs). See the
// [Annotation resource][google.genomics.v1.Annotation]
// for additional restrictions on each field.
CreateAnnotation(ctx context.Context, in *CreateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
// Creates one or more new annotations atomically. All annotations must
// belong to the same annotation set. Caller must have WRITE
// permission for this annotation set. For optimal performance, batch
// positionally adjacent annotations together.
//
// If the request has a systemic issue, such as an attempt to write to
// an inaccessible annotation set, the entire RPC will fail accordingly. For
// lesser data issues, when possible an error will be isolated to the
// corresponding batch entry in the response; the remaining well formed
// annotations will be created normally.
//
// For details on the requirements for each individual annotation resource,
// see
// [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
BatchCreateAnnotations(ctx context.Context, in *BatchCreateAnnotationsRequest, opts ...grpc.CallOption) (*BatchCreateAnnotationsResponse, error)
// Gets an annotation. Caller must have READ permission
// for the associated annotation set.
GetAnnotation(ctx context.Context, in *GetAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
// Updates an annotation. Caller must have
// WRITE permission for the associated dataset.
UpdateAnnotation(ctx context.Context, in *UpdateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error)
// Deletes an annotation. Caller must have WRITE permission for
// the associated annotation set.
DeleteAnnotation(ctx context.Context, in *DeleteAnnotationRequest, opts ...grpc.CallOption) (*empty.Empty, error)
// Searches for annotations that match the given criteria. Results are
// ordered by genomic coordinate (by reference sequence, then position).
// Annotations with equivalent genomic coordinates are returned in an
// unspecified order. This order is consistent, such that two queries for the
// same content (regardless of page size) yield annotations in the same order
// across their respective streams of paginated responses. Caller must have
// READ permission for the queried annotation sets.
SearchAnnotations(ctx context.Context, in *SearchAnnotationsRequest, opts ...grpc.CallOption) (*SearchAnnotationsResponse, error)
}
type annotationServiceV1Client struct {
cc *grpc.ClientConn
}
func NewAnnotationServiceV1Client(cc *grpc.ClientConn) AnnotationServiceV1Client {
return &annotationServiceV1Client{cc}
}
func (c *annotationServiceV1Client) CreateAnnotationSet(ctx context.Context, in *CreateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error) {
out := new(AnnotationSet)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/CreateAnnotationSet", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) GetAnnotationSet(ctx context.Context, in *GetAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error) {
out := new(AnnotationSet)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/GetAnnotationSet", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) UpdateAnnotationSet(ctx context.Context, in *UpdateAnnotationSetRequest, opts ...grpc.CallOption) (*AnnotationSet, error) {
out := new(AnnotationSet)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/UpdateAnnotationSet", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) DeleteAnnotationSet(ctx context.Context, in *DeleteAnnotationSetRequest, opts ...grpc.CallOption) (*empty.Empty, error) {
out := new(empty.Empty)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/DeleteAnnotationSet", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) SearchAnnotationSets(ctx context.Context, in *SearchAnnotationSetsRequest, opts ...grpc.CallOption) (*SearchAnnotationSetsResponse, error) {
out := new(SearchAnnotationSetsResponse)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/SearchAnnotationSets", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) CreateAnnotation(ctx context.Context, in *CreateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error) {
out := new(Annotation)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/CreateAnnotation", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) BatchCreateAnnotations(ctx context.Context, in *BatchCreateAnnotationsRequest, opts ...grpc.CallOption) (*BatchCreateAnnotationsResponse, error) {
out := new(BatchCreateAnnotationsResponse)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/BatchCreateAnnotations", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) GetAnnotation(ctx context.Context, in *GetAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error) {
out := new(Annotation)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/GetAnnotation", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) UpdateAnnotation(ctx context.Context, in *UpdateAnnotationRequest, opts ...grpc.CallOption) (*Annotation, error) {
out := new(Annotation)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/UpdateAnnotation", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) DeleteAnnotation(ctx context.Context, in *DeleteAnnotationRequest, opts ...grpc.CallOption) (*empty.Empty, error) {
out := new(empty.Empty)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/DeleteAnnotation", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *annotationServiceV1Client) SearchAnnotations(ctx context.Context, in *SearchAnnotationsRequest, opts ...grpc.CallOption) (*SearchAnnotationsResponse, error) {
out := new(SearchAnnotationsResponse)
err := c.cc.Invoke(ctx, "/google.genomics.v1.AnnotationServiceV1/SearchAnnotations", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
// AnnotationServiceV1Server is the server API for AnnotationServiceV1 service.
type AnnotationServiceV1Server interface {
// Creates a new annotation set. Caller must have WRITE permission for the
// associated dataset.
//
// The following fields are required:
//
// * [datasetId][google.genomics.v1.AnnotationSet.dataset_id]
// * [referenceSetId][google.genomics.v1.AnnotationSet.reference_set_id]
//
// All other fields may be optionally specified, unless documented as being
// server-generated (for example, the `id` field).
CreateAnnotationSet(context.Context, *CreateAnnotationSetRequest) (*AnnotationSet, error)
// Gets an annotation set. Caller must have READ permission for
// the associated dataset.
GetAnnotationSet(context.Context, *GetAnnotationSetRequest) (*AnnotationSet, error)
// Updates an annotation set. The update must respect all mutability
// restrictions and other invariants described on the annotation set resource.
// Caller must have WRITE permission for the associated dataset.
UpdateAnnotationSet(context.Context, *UpdateAnnotationSetRequest) (*AnnotationSet, error)
// Deletes an annotation set. Caller must have WRITE permission
// for the associated annotation set.
DeleteAnnotationSet(context.Context, *DeleteAnnotationSetRequest) (*empty.Empty, error)
// Searches for annotation sets that match the given criteria. Annotation sets
// are returned in an unspecified order. This order is consistent, such that
// two queries for the same content (regardless of page size) yield annotation
// sets in the same order across their respective streams of paginated
// responses. Caller must have READ permission for the queried datasets.
SearchAnnotationSets(context.Context, *SearchAnnotationSetsRequest) (*SearchAnnotationSetsResponse, error)
// Creates a new annotation. Caller must have WRITE permission
// for the associated annotation set.
//
// The following fields are required:
//
// * [annotationSetId][google.genomics.v1.Annotation.annotation_set_id]
// * [referenceName][google.genomics.v1.Annotation.reference_name] or
// [referenceId][google.genomics.v1.Annotation.reference_id]
//
// ### Transcripts
//
// For annotations of type TRANSCRIPT, the following fields of
// [transcript][google.genomics.v1.Annotation.transcript] must be provided:
//
// * [exons.start][google.genomics.v1.Transcript.Exon.start]
// * [exons.end][google.genomics.v1.Transcript.Exon.end]
//
// All other fields may be optionally specified, unless documented as being
// server-generated (for example, the `id` field). The annotated
// range must be no longer than 100Mbp (mega base pairs). See the
// [Annotation resource][google.genomics.v1.Annotation]
// for additional restrictions on each field.
CreateAnnotation(context.Context, *CreateAnnotationRequest) (*Annotation, error)
// Creates one or more new annotations atomically. All annotations must
// belong to the same annotation set. Caller must have WRITE
// permission for this annotation set. For optimal performance, batch
// positionally adjacent annotations together.
//
// If the request has a systemic issue, such as an attempt to write to
// an inaccessible annotation set, the entire RPC will fail accordingly. For
// lesser data issues, when possible an error will be isolated to the
// corresponding batch entry in the response; the remaining well formed
// annotations will be created normally.
//
// For details on the requirements for each individual annotation resource,
// see
// [CreateAnnotation][google.genomics.v1.AnnotationServiceV1.CreateAnnotation].
BatchCreateAnnotations(context.Context, *BatchCreateAnnotationsRequest) (*BatchCreateAnnotationsResponse, error)
// Gets an annotation. Caller must have READ permission
// for the associated annotation set.
GetAnnotation(context.Context, *GetAnnotationRequest) (*Annotation, error)
// Updates an annotation. Caller must have
// WRITE permission for the associated dataset.
UpdateAnnotation(context.Context, *UpdateAnnotationRequest) (*Annotation, error)
// Deletes an annotation. Caller must have WRITE permission for
// the associated annotation set.
DeleteAnnotation(context.Context, *DeleteAnnotationRequest) (*empty.Empty, error)
// Searches for annotations that match the given criteria. Results are
// ordered by genomic coordinate (by reference sequence, then position).
// Annotations with equivalent genomic coordinates are returned in an
// unspecified order. This order is consistent, such that two queries for the
// same content (regardless of page size) yield annotations in the same order
// across their respective streams of paginated responses. Caller must have
// READ permission for the queried annotation sets.
SearchAnnotations(context.Context, *SearchAnnotationsRequest) (*SearchAnnotationsResponse, error)
}
func RegisterAnnotationServiceV1Server(s *grpc.Server, srv AnnotationServiceV1Server) {
s.RegisterService(&_AnnotationServiceV1_serviceDesc, srv)
}
func _AnnotationServiceV1_CreateAnnotationSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(CreateAnnotationSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).CreateAnnotationSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/CreateAnnotationSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).CreateAnnotationSet(ctx, req.(*CreateAnnotationSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_GetAnnotationSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(GetAnnotationSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).GetAnnotationSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/GetAnnotationSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).GetAnnotationSet(ctx, req.(*GetAnnotationSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_UpdateAnnotationSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(UpdateAnnotationSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).UpdateAnnotationSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/UpdateAnnotationSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).UpdateAnnotationSet(ctx, req.(*UpdateAnnotationSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_DeleteAnnotationSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(DeleteAnnotationSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).DeleteAnnotationSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/DeleteAnnotationSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).DeleteAnnotationSet(ctx, req.(*DeleteAnnotationSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_SearchAnnotationSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(SearchAnnotationSetsRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).SearchAnnotationSets(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/SearchAnnotationSets",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).SearchAnnotationSets(ctx, req.(*SearchAnnotationSetsRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_CreateAnnotation_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(CreateAnnotationRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).CreateAnnotation(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/CreateAnnotation",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).CreateAnnotation(ctx, req.(*CreateAnnotationRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_BatchCreateAnnotations_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(BatchCreateAnnotationsRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).BatchCreateAnnotations(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/BatchCreateAnnotations",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).BatchCreateAnnotations(ctx, req.(*BatchCreateAnnotationsRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_GetAnnotation_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(GetAnnotationRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).GetAnnotation(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/GetAnnotation",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).GetAnnotation(ctx, req.(*GetAnnotationRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_UpdateAnnotation_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(UpdateAnnotationRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).UpdateAnnotation(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/UpdateAnnotation",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).UpdateAnnotation(ctx, req.(*UpdateAnnotationRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_DeleteAnnotation_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(DeleteAnnotationRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).DeleteAnnotation(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/DeleteAnnotation",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).DeleteAnnotation(ctx, req.(*DeleteAnnotationRequest))
}
return interceptor(ctx, in, info, handler)
}
func _AnnotationServiceV1_SearchAnnotations_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(SearchAnnotationsRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(AnnotationServiceV1Server).SearchAnnotations(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.AnnotationServiceV1/SearchAnnotations",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(AnnotationServiceV1Server).SearchAnnotations(ctx, req.(*SearchAnnotationsRequest))
}
return interceptor(ctx, in, info, handler)
}
var _AnnotationServiceV1_serviceDesc = grpc.ServiceDesc{
ServiceName: "google.genomics.v1.AnnotationServiceV1",
HandlerType: (*AnnotationServiceV1Server)(nil),
Methods: []grpc.MethodDesc{
{
MethodName: "CreateAnnotationSet",
Handler: _AnnotationServiceV1_CreateAnnotationSet_Handler,
},
{
MethodName: "GetAnnotationSet",
Handler: _AnnotationServiceV1_GetAnnotationSet_Handler,
},
{
MethodName: "UpdateAnnotationSet",
Handler: _AnnotationServiceV1_UpdateAnnotationSet_Handler,
},
{
MethodName: "DeleteAnnotationSet",
Handler: _AnnotationServiceV1_DeleteAnnotationSet_Handler,
},
{
MethodName: "SearchAnnotationSets",
Handler: _AnnotationServiceV1_SearchAnnotationSets_Handler,
},
{
MethodName: "CreateAnnotation",
Handler: _AnnotationServiceV1_CreateAnnotation_Handler,
},
{
MethodName: "BatchCreateAnnotations",
Handler: _AnnotationServiceV1_BatchCreateAnnotations_Handler,
},
{
MethodName: "GetAnnotation",
Handler: _AnnotationServiceV1_GetAnnotation_Handler,
},
{
MethodName: "UpdateAnnotation",
Handler: _AnnotationServiceV1_UpdateAnnotation_Handler,
},
{
MethodName: "DeleteAnnotation",
Handler: _AnnotationServiceV1_DeleteAnnotation_Handler,
},
{
MethodName: "SearchAnnotations",
Handler: _AnnotationServiceV1_SearchAnnotations_Handler,
},
},
Streams: []grpc.StreamDesc{},
Metadata: "google/genomics/v1/annotations.proto",
}
func init() {
proto.RegisterFile("google/genomics/v1/annotations.proto", fileDescriptor_annotations_1d574ef120ac57f0)
}
var fileDescriptor_annotations_1d574ef120ac57f0 = []byte{
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}
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