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nginx-sso/vendor/google.golang.org/genproto/googleapis/genomics/v1/references.pb.go
Knut Ahlers 9b3c895c04
Update dependencies 
Signed-off-by: Knut Ahlers <knut@ahlers.me>
2019-04-22 06:44:07 +02:00

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// Code generated by protoc-gen-go. DO NOT EDIT.
// source: google/genomics/v1/references.proto
package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
import proto "github.com/golang/protobuf/proto"
import fmt "fmt"
import math "math"
import _ "google.golang.org/genproto/googleapis/api/annotations"
import (
context "golang.org/x/net/context"
grpc "google.golang.org/grpc"
)
// Reference imports to suppress errors if they are not otherwise used.
var _ = proto.Marshal
var _ = fmt.Errorf
var _ = math.Inf
// This is a compile-time assertion to ensure that this generated file
// is compatible with the proto package it is being compiled against.
// A compilation error at this line likely means your copy of the
// proto package needs to be updated.
const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
// A reference is a canonical assembled DNA sequence, intended to act as a
// reference coordinate space for other genomic annotations. A single reference
// might represent the human chromosome 1 or mitochandrial DNA, for instance. A
// reference belongs to one or more reference sets.
//
// For more genomics resource definitions, see [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
type Reference struct {
// The server-generated reference ID, unique across all references.
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The length of this reference's sequence.
Length int64 `protobuf:"varint,2,opt,name=length,proto3" json:"length,omitempty"`
// MD5 of the upper-case sequence excluding all whitespace characters (this
// is equivalent to SQ:M5 in SAM). This value is represented in lower case
// hexadecimal format.
Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
// The name of this reference, for example `22`.
Name string `protobuf:"bytes,4,opt,name=name,proto3" json:"name,omitempty"`
// The URI from which the sequence was obtained. Typically specifies a FASTA
// format file.
SourceUri string `protobuf:"bytes,5,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
// with a version number, for example `GCF_000001405.26`.
SourceAccessions []string `protobuf:"bytes,6,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
// ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
NcbiTaxonId int32 `protobuf:"varint,7,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *Reference) Reset() { *m = Reference{} }
func (m *Reference) String() string { return proto.CompactTextString(m) }
func (*Reference) ProtoMessage() {}
func (*Reference) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{0}
}
func (m *Reference) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_Reference.Unmarshal(m, b)
}
func (m *Reference) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_Reference.Marshal(b, m, deterministic)
}
func (dst *Reference) XXX_Merge(src proto.Message) {
xxx_messageInfo_Reference.Merge(dst, src)
}
func (m *Reference) XXX_Size() int {
return xxx_messageInfo_Reference.Size(m)
}
func (m *Reference) XXX_DiscardUnknown() {
xxx_messageInfo_Reference.DiscardUnknown(m)
}
var xxx_messageInfo_Reference proto.InternalMessageInfo
func (m *Reference) GetId() string {
if m != nil {
return m.Id
}
return ""
}
func (m *Reference) GetLength() int64 {
if m != nil {
return m.Length
}
return 0
}
func (m *Reference) GetMd5Checksum() string {
if m != nil {
return m.Md5Checksum
}
return ""
}
func (m *Reference) GetName() string {
if m != nil {
return m.Name
}
return ""
}
func (m *Reference) GetSourceUri() string {
if m != nil {
return m.SourceUri
}
return ""
}
func (m *Reference) GetSourceAccessions() []string {
if m != nil {
return m.SourceAccessions
}
return nil
}
func (m *Reference) GetNcbiTaxonId() int32 {
if m != nil {
return m.NcbiTaxonId
}
return 0
}
// A reference set is a set of references which typically comprise a reference
// assembly for a species, such as `GRCh38` which is representative
// of the human genome. A reference set defines a common coordinate space for
// comparing reference-aligned experimental data. A reference set contains 1 or
// more references.
//
// For more genomics resource definitions, see [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
type ReferenceSet struct {
// The server-generated reference set ID, unique across all reference sets.
Id string `protobuf:"bytes,1,opt,name=id,proto3" json:"id,omitempty"`
// The IDs of the reference objects that are part of this set.
// `Reference.md5checksum` must be unique within this set.
ReferenceIds []string `protobuf:"bytes,2,rep,name=reference_ids,json=referenceIds,proto3" json:"reference_ids,omitempty"`
// Order-independent MD5 checksum which identifies this reference set. The
// checksum is computed by sorting all lower case hexidecimal string
// `reference.md5checksum` (for all reference in this set) in
// ascending lexicographic order, concatenating, and taking the MD5 of that
// value. The resulting value is represented in lower case hexadecimal format.
Md5Checksum string `protobuf:"bytes,3,opt,name=md5checksum,proto3" json:"md5checksum,omitempty"`
// ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
// indicating the species which this reference set is intended to model. Note
// that contained references may specify a different `ncbiTaxonId`, as
// assemblies may contain reference sequences which do not belong to the
// modeled species, for example EBV in a human reference genome.
NcbiTaxonId int32 `protobuf:"varint,4,opt,name=ncbi_taxon_id,json=ncbiTaxonId,proto3" json:"ncbi_taxon_id,omitempty"`
// Free text description of this reference set.
Description string `protobuf:"bytes,5,opt,name=description,proto3" json:"description,omitempty"`
// Public id of this reference set, such as `GRCh37`.
AssemblyId string `protobuf:"bytes,6,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
// The URI from which the references were obtained.
SourceUri string `protobuf:"bytes,7,opt,name=source_uri,json=sourceUri,proto3" json:"source_uri,omitempty"`
// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
// with a version number, for example `NC_000001.11`.
SourceAccessions []string `protobuf:"bytes,8,rep,name=source_accessions,json=sourceAccessions,proto3" json:"source_accessions,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ReferenceSet) Reset() { *m = ReferenceSet{} }
func (m *ReferenceSet) String() string { return proto.CompactTextString(m) }
func (*ReferenceSet) ProtoMessage() {}
func (*ReferenceSet) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{1}
}
func (m *ReferenceSet) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ReferenceSet.Unmarshal(m, b)
}
func (m *ReferenceSet) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ReferenceSet.Marshal(b, m, deterministic)
}
func (dst *ReferenceSet) XXX_Merge(src proto.Message) {
xxx_messageInfo_ReferenceSet.Merge(dst, src)
}
func (m *ReferenceSet) XXX_Size() int {
return xxx_messageInfo_ReferenceSet.Size(m)
}
func (m *ReferenceSet) XXX_DiscardUnknown() {
xxx_messageInfo_ReferenceSet.DiscardUnknown(m)
}
var xxx_messageInfo_ReferenceSet proto.InternalMessageInfo
func (m *ReferenceSet) GetId() string {
if m != nil {
return m.Id
}
return ""
}
func (m *ReferenceSet) GetReferenceIds() []string {
if m != nil {
return m.ReferenceIds
}
return nil
}
func (m *ReferenceSet) GetMd5Checksum() string {
if m != nil {
return m.Md5Checksum
}
return ""
}
func (m *ReferenceSet) GetNcbiTaxonId() int32 {
if m != nil {
return m.NcbiTaxonId
}
return 0
}
func (m *ReferenceSet) GetDescription() string {
if m != nil {
return m.Description
}
return ""
}
func (m *ReferenceSet) GetAssemblyId() string {
if m != nil {
return m.AssemblyId
}
return ""
}
func (m *ReferenceSet) GetSourceUri() string {
if m != nil {
return m.SourceUri
}
return ""
}
func (m *ReferenceSet) GetSourceAccessions() []string {
if m != nil {
return m.SourceAccessions
}
return nil
}
type SearchReferenceSetsRequest struct {
// If present, return reference sets for which the
// [md5checksum][google.genomics.v1.ReferenceSet.md5checksum] matches exactly.
Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
// If present, return reference sets for which a prefix of any of
// [sourceAccessions][google.genomics.v1.ReferenceSet.source_accessions]
// match any of these strings. Accession numbers typically have a main number
// and a version, for example `NC_000001.11`.
Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
// If present, return reference sets for which a substring of their
// `assemblyId` matches this string (case insensitive).
AssemblyId string `protobuf:"bytes,3,opt,name=assembly_id,json=assemblyId,proto3" json:"assembly_id,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
// The maximum number of results to return in a single page. If unspecified,
// defaults to 1024. The maximum value is 4096.
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchReferenceSetsRequest) Reset() { *m = SearchReferenceSetsRequest{} }
func (m *SearchReferenceSetsRequest) String() string { return proto.CompactTextString(m) }
func (*SearchReferenceSetsRequest) ProtoMessage() {}
func (*SearchReferenceSetsRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{2}
}
func (m *SearchReferenceSetsRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchReferenceSetsRequest.Unmarshal(m, b)
}
func (m *SearchReferenceSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchReferenceSetsRequest.Marshal(b, m, deterministic)
}
func (dst *SearchReferenceSetsRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchReferenceSetsRequest.Merge(dst, src)
}
func (m *SearchReferenceSetsRequest) XXX_Size() int {
return xxx_messageInfo_SearchReferenceSetsRequest.Size(m)
}
func (m *SearchReferenceSetsRequest) XXX_DiscardUnknown() {
xxx_messageInfo_SearchReferenceSetsRequest.DiscardUnknown(m)
}
var xxx_messageInfo_SearchReferenceSetsRequest proto.InternalMessageInfo
func (m *SearchReferenceSetsRequest) GetMd5Checksums() []string {
if m != nil {
return m.Md5Checksums
}
return nil
}
func (m *SearchReferenceSetsRequest) GetAccessions() []string {
if m != nil {
return m.Accessions
}
return nil
}
func (m *SearchReferenceSetsRequest) GetAssemblyId() string {
if m != nil {
return m.AssemblyId
}
return ""
}
func (m *SearchReferenceSetsRequest) GetPageToken() string {
if m != nil {
return m.PageToken
}
return ""
}
func (m *SearchReferenceSetsRequest) GetPageSize() int32 {
if m != nil {
return m.PageSize
}
return 0
}
type SearchReferenceSetsResponse struct {
// The matching references sets.
ReferenceSets []*ReferenceSet `protobuf:"bytes,1,rep,name=reference_sets,json=referenceSets,proto3" json:"reference_sets,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchReferenceSetsResponse) Reset() { *m = SearchReferenceSetsResponse{} }
func (m *SearchReferenceSetsResponse) String() string { return proto.CompactTextString(m) }
func (*SearchReferenceSetsResponse) ProtoMessage() {}
func (*SearchReferenceSetsResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{3}
}
func (m *SearchReferenceSetsResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchReferenceSetsResponse.Unmarshal(m, b)
}
func (m *SearchReferenceSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchReferenceSetsResponse.Marshal(b, m, deterministic)
}
func (dst *SearchReferenceSetsResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchReferenceSetsResponse.Merge(dst, src)
}
func (m *SearchReferenceSetsResponse) XXX_Size() int {
return xxx_messageInfo_SearchReferenceSetsResponse.Size(m)
}
func (m *SearchReferenceSetsResponse) XXX_DiscardUnknown() {
xxx_messageInfo_SearchReferenceSetsResponse.DiscardUnknown(m)
}
var xxx_messageInfo_SearchReferenceSetsResponse proto.InternalMessageInfo
func (m *SearchReferenceSetsResponse) GetReferenceSets() []*ReferenceSet {
if m != nil {
return m.ReferenceSets
}
return nil
}
func (m *SearchReferenceSetsResponse) GetNextPageToken() string {
if m != nil {
return m.NextPageToken
}
return ""
}
type GetReferenceSetRequest struct {
// The ID of the reference set.
ReferenceSetId string `protobuf:"bytes,1,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *GetReferenceSetRequest) Reset() { *m = GetReferenceSetRequest{} }
func (m *GetReferenceSetRequest) String() string { return proto.CompactTextString(m) }
func (*GetReferenceSetRequest) ProtoMessage() {}
func (*GetReferenceSetRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{4}
}
func (m *GetReferenceSetRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_GetReferenceSetRequest.Unmarshal(m, b)
}
func (m *GetReferenceSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_GetReferenceSetRequest.Marshal(b, m, deterministic)
}
func (dst *GetReferenceSetRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_GetReferenceSetRequest.Merge(dst, src)
}
func (m *GetReferenceSetRequest) XXX_Size() int {
return xxx_messageInfo_GetReferenceSetRequest.Size(m)
}
func (m *GetReferenceSetRequest) XXX_DiscardUnknown() {
xxx_messageInfo_GetReferenceSetRequest.DiscardUnknown(m)
}
var xxx_messageInfo_GetReferenceSetRequest proto.InternalMessageInfo
func (m *GetReferenceSetRequest) GetReferenceSetId() string {
if m != nil {
return m.ReferenceSetId
}
return ""
}
type SearchReferencesRequest struct {
// If present, return references for which the
// [md5checksum][google.genomics.v1.Reference.md5checksum] matches exactly.
Md5Checksums []string `protobuf:"bytes,1,rep,name=md5checksums,proto3" json:"md5checksums,omitempty"`
// If present, return references for which a prefix of any of
// [sourceAccessions][google.genomics.v1.Reference.source_accessions] match
// any of these strings. Accession numbers typically have a main number and a
// version, for example `GCF_000001405.26`.
Accessions []string `protobuf:"bytes,2,rep,name=accessions,proto3" json:"accessions,omitempty"`
// If present, return only references which belong to this reference set.
ReferenceSetId string `protobuf:"bytes,3,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
// The maximum number of results to return in a single page. If unspecified,
// defaults to 1024. The maximum value is 4096.
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchReferencesRequest) Reset() { *m = SearchReferencesRequest{} }
func (m *SearchReferencesRequest) String() string { return proto.CompactTextString(m) }
func (*SearchReferencesRequest) ProtoMessage() {}
func (*SearchReferencesRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{5}
}
func (m *SearchReferencesRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchReferencesRequest.Unmarshal(m, b)
}
func (m *SearchReferencesRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchReferencesRequest.Marshal(b, m, deterministic)
}
func (dst *SearchReferencesRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchReferencesRequest.Merge(dst, src)
}
func (m *SearchReferencesRequest) XXX_Size() int {
return xxx_messageInfo_SearchReferencesRequest.Size(m)
}
func (m *SearchReferencesRequest) XXX_DiscardUnknown() {
xxx_messageInfo_SearchReferencesRequest.DiscardUnknown(m)
}
var xxx_messageInfo_SearchReferencesRequest proto.InternalMessageInfo
func (m *SearchReferencesRequest) GetMd5Checksums() []string {
if m != nil {
return m.Md5Checksums
}
return nil
}
func (m *SearchReferencesRequest) GetAccessions() []string {
if m != nil {
return m.Accessions
}
return nil
}
func (m *SearchReferencesRequest) GetReferenceSetId() string {
if m != nil {
return m.ReferenceSetId
}
return ""
}
func (m *SearchReferencesRequest) GetPageToken() string {
if m != nil {
return m.PageToken
}
return ""
}
func (m *SearchReferencesRequest) GetPageSize() int32 {
if m != nil {
return m.PageSize
}
return 0
}
type SearchReferencesResponse struct {
// The matching references.
References []*Reference `protobuf:"bytes,1,rep,name=references,proto3" json:"references,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *SearchReferencesResponse) Reset() { *m = SearchReferencesResponse{} }
func (m *SearchReferencesResponse) String() string { return proto.CompactTextString(m) }
func (*SearchReferencesResponse) ProtoMessage() {}
func (*SearchReferencesResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{6}
}
func (m *SearchReferencesResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_SearchReferencesResponse.Unmarshal(m, b)
}
func (m *SearchReferencesResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_SearchReferencesResponse.Marshal(b, m, deterministic)
}
func (dst *SearchReferencesResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_SearchReferencesResponse.Merge(dst, src)
}
func (m *SearchReferencesResponse) XXX_Size() int {
return xxx_messageInfo_SearchReferencesResponse.Size(m)
}
func (m *SearchReferencesResponse) XXX_DiscardUnknown() {
xxx_messageInfo_SearchReferencesResponse.DiscardUnknown(m)
}
var xxx_messageInfo_SearchReferencesResponse proto.InternalMessageInfo
func (m *SearchReferencesResponse) GetReferences() []*Reference {
if m != nil {
return m.References
}
return nil
}
func (m *SearchReferencesResponse) GetNextPageToken() string {
if m != nil {
return m.NextPageToken
}
return ""
}
type GetReferenceRequest struct {
// The ID of the reference.
ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *GetReferenceRequest) Reset() { *m = GetReferenceRequest{} }
func (m *GetReferenceRequest) String() string { return proto.CompactTextString(m) }
func (*GetReferenceRequest) ProtoMessage() {}
func (*GetReferenceRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{7}
}
func (m *GetReferenceRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_GetReferenceRequest.Unmarshal(m, b)
}
func (m *GetReferenceRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_GetReferenceRequest.Marshal(b, m, deterministic)
}
func (dst *GetReferenceRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_GetReferenceRequest.Merge(dst, src)
}
func (m *GetReferenceRequest) XXX_Size() int {
return xxx_messageInfo_GetReferenceRequest.Size(m)
}
func (m *GetReferenceRequest) XXX_DiscardUnknown() {
xxx_messageInfo_GetReferenceRequest.DiscardUnknown(m)
}
var xxx_messageInfo_GetReferenceRequest proto.InternalMessageInfo
func (m *GetReferenceRequest) GetReferenceId() string {
if m != nil {
return m.ReferenceId
}
return ""
}
type ListBasesRequest struct {
// The ID of the reference.
ReferenceId string `protobuf:"bytes,1,opt,name=reference_id,json=referenceId,proto3" json:"reference_id,omitempty"`
// The start position (0-based) of this query. Defaults to 0.
Start int64 `protobuf:"varint,2,opt,name=start,proto3" json:"start,omitempty"`
// The end position (0-based, exclusive) of this query. Defaults to the length
// of this reference.
End int64 `protobuf:"varint,3,opt,name=end,proto3" json:"end,omitempty"`
// The continuation token, which is used to page through large result sets.
// To get the next page of results, set this parameter to the value of
// `nextPageToken` from the previous response.
PageToken string `protobuf:"bytes,4,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
// The maximum number of bases to return in a single page. If unspecified,
// defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
// pairs).
PageSize int32 `protobuf:"varint,5,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ListBasesRequest) Reset() { *m = ListBasesRequest{} }
func (m *ListBasesRequest) String() string { return proto.CompactTextString(m) }
func (*ListBasesRequest) ProtoMessage() {}
func (*ListBasesRequest) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{8}
}
func (m *ListBasesRequest) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ListBasesRequest.Unmarshal(m, b)
}
func (m *ListBasesRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ListBasesRequest.Marshal(b, m, deterministic)
}
func (dst *ListBasesRequest) XXX_Merge(src proto.Message) {
xxx_messageInfo_ListBasesRequest.Merge(dst, src)
}
func (m *ListBasesRequest) XXX_Size() int {
return xxx_messageInfo_ListBasesRequest.Size(m)
}
func (m *ListBasesRequest) XXX_DiscardUnknown() {
xxx_messageInfo_ListBasesRequest.DiscardUnknown(m)
}
var xxx_messageInfo_ListBasesRequest proto.InternalMessageInfo
func (m *ListBasesRequest) GetReferenceId() string {
if m != nil {
return m.ReferenceId
}
return ""
}
func (m *ListBasesRequest) GetStart() int64 {
if m != nil {
return m.Start
}
return 0
}
func (m *ListBasesRequest) GetEnd() int64 {
if m != nil {
return m.End
}
return 0
}
func (m *ListBasesRequest) GetPageToken() string {
if m != nil {
return m.PageToken
}
return ""
}
func (m *ListBasesRequest) GetPageSize() int32 {
if m != nil {
return m.PageSize
}
return 0
}
type ListBasesResponse struct {
// The offset position (0-based) of the given `sequence` from the
// start of this `Reference`. This value will differ for each page
// in a paginated request.
Offset int64 `protobuf:"varint,1,opt,name=offset,proto3" json:"offset,omitempty"`
// A substring of the bases that make up this reference.
Sequence string `protobuf:"bytes,2,opt,name=sequence,proto3" json:"sequence,omitempty"`
// The continuation token, which is used to page through large result sets.
// Provide this value in a subsequent request to return the next page of
// results. This field will be empty if there aren't any additional results.
NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
XXX_NoUnkeyedLiteral struct{} `json:"-"`
XXX_unrecognized []byte `json:"-"`
XXX_sizecache int32 `json:"-"`
}
func (m *ListBasesResponse) Reset() { *m = ListBasesResponse{} }
func (m *ListBasesResponse) String() string { return proto.CompactTextString(m) }
func (*ListBasesResponse) ProtoMessage() {}
func (*ListBasesResponse) Descriptor() ([]byte, []int) {
return fileDescriptor_references_5de88386bc96d288, []int{9}
}
func (m *ListBasesResponse) XXX_Unmarshal(b []byte) error {
return xxx_messageInfo_ListBasesResponse.Unmarshal(m, b)
}
func (m *ListBasesResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
return xxx_messageInfo_ListBasesResponse.Marshal(b, m, deterministic)
}
func (dst *ListBasesResponse) XXX_Merge(src proto.Message) {
xxx_messageInfo_ListBasesResponse.Merge(dst, src)
}
func (m *ListBasesResponse) XXX_Size() int {
return xxx_messageInfo_ListBasesResponse.Size(m)
}
func (m *ListBasesResponse) XXX_DiscardUnknown() {
xxx_messageInfo_ListBasesResponse.DiscardUnknown(m)
}
var xxx_messageInfo_ListBasesResponse proto.InternalMessageInfo
func (m *ListBasesResponse) GetOffset() int64 {
if m != nil {
return m.Offset
}
return 0
}
func (m *ListBasesResponse) GetSequence() string {
if m != nil {
return m.Sequence
}
return ""
}
func (m *ListBasesResponse) GetNextPageToken() string {
if m != nil {
return m.NextPageToken
}
return ""
}
func init() {
proto.RegisterType((*Reference)(nil), "google.genomics.v1.Reference")
proto.RegisterType((*ReferenceSet)(nil), "google.genomics.v1.ReferenceSet")
proto.RegisterType((*SearchReferenceSetsRequest)(nil), "google.genomics.v1.SearchReferenceSetsRequest")
proto.RegisterType((*SearchReferenceSetsResponse)(nil), "google.genomics.v1.SearchReferenceSetsResponse")
proto.RegisterType((*GetReferenceSetRequest)(nil), "google.genomics.v1.GetReferenceSetRequest")
proto.RegisterType((*SearchReferencesRequest)(nil), "google.genomics.v1.SearchReferencesRequest")
proto.RegisterType((*SearchReferencesResponse)(nil), "google.genomics.v1.SearchReferencesResponse")
proto.RegisterType((*GetReferenceRequest)(nil), "google.genomics.v1.GetReferenceRequest")
proto.RegisterType((*ListBasesRequest)(nil), "google.genomics.v1.ListBasesRequest")
proto.RegisterType((*ListBasesResponse)(nil), "google.genomics.v1.ListBasesResponse")
}
// Reference imports to suppress errors if they are not otherwise used.
var _ context.Context
var _ grpc.ClientConn
// This is a compile-time assertion to ensure that this generated file
// is compatible with the grpc package it is being compiled against.
const _ = grpc.SupportPackageIsVersion4
// ReferenceServiceV1Client is the client API for ReferenceServiceV1 service.
//
// For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
type ReferenceServiceV1Client interface {
// Searches for reference sets which match the given criteria.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error)
// Gets a reference set.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error)
// Searches for references which match the given criteria.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error)
// Gets a reference.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error)
// Lists the bases in a reference, optionally restricted to a range.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error)
}
type referenceServiceV1Client struct {
cc *grpc.ClientConn
}
func NewReferenceServiceV1Client(cc *grpc.ClientConn) ReferenceServiceV1Client {
return &referenceServiceV1Client{cc}
}
func (c *referenceServiceV1Client) SearchReferenceSets(ctx context.Context, in *SearchReferenceSetsRequest, opts ...grpc.CallOption) (*SearchReferenceSetsResponse, error) {
out := new(SearchReferenceSetsResponse)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *referenceServiceV1Client) GetReferenceSet(ctx context.Context, in *GetReferenceSetRequest, opts ...grpc.CallOption) (*ReferenceSet, error) {
out := new(ReferenceSet)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *referenceServiceV1Client) SearchReferences(ctx context.Context, in *SearchReferencesRequest, opts ...grpc.CallOption) (*SearchReferencesResponse, error) {
out := new(SearchReferencesResponse)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/SearchReferences", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *referenceServiceV1Client) GetReference(ctx context.Context, in *GetReferenceRequest, opts ...grpc.CallOption) (*Reference, error) {
out := new(Reference)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/GetReference", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
func (c *referenceServiceV1Client) ListBases(ctx context.Context, in *ListBasesRequest, opts ...grpc.CallOption) (*ListBasesResponse, error) {
out := new(ListBasesResponse)
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReferenceServiceV1/ListBases", in, out, opts...)
if err != nil {
return nil, err
}
return out, nil
}
// ReferenceServiceV1Server is the server API for ReferenceServiceV1 service.
type ReferenceServiceV1Server interface {
// Searches for reference sets which match the given criteria.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
SearchReferenceSets(context.Context, *SearchReferenceSetsRequest) (*SearchReferenceSetsResponse, error)
// Gets a reference set.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
GetReferenceSet(context.Context, *GetReferenceSetRequest) (*ReferenceSet, error)
// Searches for references which match the given criteria.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
SearchReferences(context.Context, *SearchReferencesRequest) (*SearchReferencesResponse, error)
// Gets a reference.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
GetReference(context.Context, *GetReferenceRequest) (*Reference, error)
// Lists the bases in a reference, optionally restricted to a range.
//
// For the definitions of references and other genomics resources, see
// [Fundamentals of Google
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
//
// Implements
// [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
ListBases(context.Context, *ListBasesRequest) (*ListBasesResponse, error)
}
func RegisterReferenceServiceV1Server(s *grpc.Server, srv ReferenceServiceV1Server) {
s.RegisterService(&_ReferenceServiceV1_serviceDesc, srv)
}
func _ReferenceServiceV1_SearchReferenceSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(SearchReferenceSetsRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(ReferenceServiceV1Server).SearchReferenceSets(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.ReferenceServiceV1/SearchReferenceSets",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(ReferenceServiceV1Server).SearchReferenceSets(ctx, req.(*SearchReferenceSetsRequest))
}
return interceptor(ctx, in, info, handler)
}
func _ReferenceServiceV1_GetReferenceSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(GetReferenceSetRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(ReferenceServiceV1Server).GetReferenceSet(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.ReferenceServiceV1/GetReferenceSet",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(ReferenceServiceV1Server).GetReferenceSet(ctx, req.(*GetReferenceSetRequest))
}
return interceptor(ctx, in, info, handler)
}
func _ReferenceServiceV1_SearchReferences_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(SearchReferencesRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(ReferenceServiceV1Server).SearchReferences(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.ReferenceServiceV1/SearchReferences",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(ReferenceServiceV1Server).SearchReferences(ctx, req.(*SearchReferencesRequest))
}
return interceptor(ctx, in, info, handler)
}
func _ReferenceServiceV1_GetReference_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(GetReferenceRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(ReferenceServiceV1Server).GetReference(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.ReferenceServiceV1/GetReference",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(ReferenceServiceV1Server).GetReference(ctx, req.(*GetReferenceRequest))
}
return interceptor(ctx, in, info, handler)
}
func _ReferenceServiceV1_ListBases_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
in := new(ListBasesRequest)
if err := dec(in); err != nil {
return nil, err
}
if interceptor == nil {
return srv.(ReferenceServiceV1Server).ListBases(ctx, in)
}
info := &grpc.UnaryServerInfo{
Server: srv,
FullMethod: "/google.genomics.v1.ReferenceServiceV1/ListBases",
}
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
return srv.(ReferenceServiceV1Server).ListBases(ctx, req.(*ListBasesRequest))
}
return interceptor(ctx, in, info, handler)
}
var _ReferenceServiceV1_serviceDesc = grpc.ServiceDesc{
ServiceName: "google.genomics.v1.ReferenceServiceV1",
HandlerType: (*ReferenceServiceV1Server)(nil),
Methods: []grpc.MethodDesc{
{
MethodName: "SearchReferenceSets",
Handler: _ReferenceServiceV1_SearchReferenceSets_Handler,
},
{
MethodName: "GetReferenceSet",
Handler: _ReferenceServiceV1_GetReferenceSet_Handler,
},
{
MethodName: "SearchReferences",
Handler: _ReferenceServiceV1_SearchReferences_Handler,
},
{
MethodName: "GetReference",
Handler: _ReferenceServiceV1_GetReference_Handler,
},
{
MethodName: "ListBases",
Handler: _ReferenceServiceV1_ListBases_Handler,
},
},
Streams: []grpc.StreamDesc{},
Metadata: "google/genomics/v1/references.proto",
}
func init() {
proto.RegisterFile("google/genomics/v1/references.proto", fileDescriptor_references_5de88386bc96d288)
}
var fileDescriptor_references_5de88386bc96d288 = []byte{
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0xe8, 0xf0, 0x4b, 0xd8, 0x8e, 0xf9, 0xa4, 0x26, 0xf1, 0xe1, 0xd6, 0xcc, 0xd6, 0x63, 0xf5, 0x4a,
0x3a, 0x26, 0x5f, 0x3c, 0x29, 0xc2, 0xf8, 0x45, 0x94, 0x8e, 0x47, 0x3c, 0x1b, 0xab, 0x97, 0x98,
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0x69, 0x4b, 0x47, 0xbe, 0xff, 0x6f, 0x00, 0x00, 0x00, 0xff, 0xff, 0xd7, 0x9f, 0xb6, 0x11, 0xc6,
0x09, 0x00, 0x00,
}
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