mirror of
https://github.com/Luzifer/nginx-sso.git
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1753 lines
75 KiB
Go
1753 lines
75 KiB
Go
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// Code generated by protoc-gen-go. DO NOT EDIT.
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// source: google/genomics/v1/reads.proto
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package genomics // import "google.golang.org/genproto/googleapis/genomics/v1"
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import proto "github.com/golang/protobuf/proto"
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import fmt "fmt"
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import math "math"
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import empty "github.com/golang/protobuf/ptypes/empty"
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import _ "google.golang.org/genproto/googleapis/api/annotations"
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import longrunning "google.golang.org/genproto/googleapis/longrunning"
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import field_mask "google.golang.org/genproto/protobuf/field_mask"
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import (
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context "golang.org/x/net/context"
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grpc "google.golang.org/grpc"
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)
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// Reference imports to suppress errors if they are not otherwise used.
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var _ = proto.Marshal
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var _ = fmt.Errorf
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var _ = math.Inf
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// This is a compile-time assertion to ensure that this generated file
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// is compatible with the proto package it is being compiled against.
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// A compilation error at this line likely means your copy of the
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// proto package needs to be updated.
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const _ = proto.ProtoPackageIsVersion2 // please upgrade the proto package
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type ImportReadGroupSetsRequest_PartitionStrategy int32
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const (
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ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED ImportReadGroupSetsRequest_PartitionStrategy = 0
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// In most cases, this strategy yields one read group set per file. This is
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// the default behavior.
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//
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// Allocate one read group set per file per sample. For BAM files, read
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// groups are considered to share a sample if they have identical sample
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// names. Furthermore, all reads for each file which do not belong to a read
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// group, if any, will be grouped into a single read group set per-file.
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ImportReadGroupSetsRequest_PER_FILE_PER_SAMPLE ImportReadGroupSetsRequest_PartitionStrategy = 1
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// Includes all read groups in all imported files into a single read group
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// set. Requires that the headers for all imported files are equivalent. All
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// reads which do not belong to a read group, if any, will be grouped into a
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// separate read group set.
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ImportReadGroupSetsRequest_MERGE_ALL ImportReadGroupSetsRequest_PartitionStrategy = 2
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)
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var ImportReadGroupSetsRequest_PartitionStrategy_name = map[int32]string{
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0: "PARTITION_STRATEGY_UNSPECIFIED",
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1: "PER_FILE_PER_SAMPLE",
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2: "MERGE_ALL",
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}
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var ImportReadGroupSetsRequest_PartitionStrategy_value = map[string]int32{
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"PARTITION_STRATEGY_UNSPECIFIED": 0,
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"PER_FILE_PER_SAMPLE": 1,
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"MERGE_ALL": 2,
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}
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func (x ImportReadGroupSetsRequest_PartitionStrategy) String() string {
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return proto.EnumName(ImportReadGroupSetsRequest_PartitionStrategy_name, int32(x))
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}
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func (ImportReadGroupSetsRequest_PartitionStrategy) EnumDescriptor() ([]byte, []int) {
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return fileDescriptor_reads_73ca36bcda9c7f65, []int{2, 0}
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}
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// The read group set search request.
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type SearchReadGroupSetsRequest struct {
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// Restricts this query to read group sets within the given datasets. At least
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// one ID must be provided.
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DatasetIds []string `protobuf:"bytes,1,rep,name=dataset_ids,json=datasetIds,proto3" json:"dataset_ids,omitempty"`
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// Only return read group sets for which a substring of the name matches this
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// string.
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Name string `protobuf:"bytes,3,opt,name=name,proto3" json:"name,omitempty"`
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// The continuation token, which is used to page through large result sets.
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// To get the next page of results, set this parameter to the value of
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// `nextPageToken` from the previous response.
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PageToken string `protobuf:"bytes,2,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
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// The maximum number of results to return in a single page. If unspecified,
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// defaults to 256. The maximum value is 1024.
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PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
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XXX_NoUnkeyedLiteral struct{} `json:"-"`
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XXX_unrecognized []byte `json:"-"`
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XXX_sizecache int32 `json:"-"`
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}
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func (m *SearchReadGroupSetsRequest) Reset() { *m = SearchReadGroupSetsRequest{} }
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func (m *SearchReadGroupSetsRequest) String() string { return proto.CompactTextString(m) }
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func (*SearchReadGroupSetsRequest) ProtoMessage() {}
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func (*SearchReadGroupSetsRequest) Descriptor() ([]byte, []int) {
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return fileDescriptor_reads_73ca36bcda9c7f65, []int{0}
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}
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func (m *SearchReadGroupSetsRequest) XXX_Unmarshal(b []byte) error {
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return xxx_messageInfo_SearchReadGroupSetsRequest.Unmarshal(m, b)
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}
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func (m *SearchReadGroupSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
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return xxx_messageInfo_SearchReadGroupSetsRequest.Marshal(b, m, deterministic)
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}
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func (dst *SearchReadGroupSetsRequest) XXX_Merge(src proto.Message) {
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xxx_messageInfo_SearchReadGroupSetsRequest.Merge(dst, src)
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}
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func (m *SearchReadGroupSetsRequest) XXX_Size() int {
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return xxx_messageInfo_SearchReadGroupSetsRequest.Size(m)
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}
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func (m *SearchReadGroupSetsRequest) XXX_DiscardUnknown() {
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xxx_messageInfo_SearchReadGroupSetsRequest.DiscardUnknown(m)
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}
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var xxx_messageInfo_SearchReadGroupSetsRequest proto.InternalMessageInfo
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func (m *SearchReadGroupSetsRequest) GetDatasetIds() []string {
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if m != nil {
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return m.DatasetIds
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}
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return nil
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}
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func (m *SearchReadGroupSetsRequest) GetName() string {
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if m != nil {
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return m.Name
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}
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return ""
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}
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func (m *SearchReadGroupSetsRequest) GetPageToken() string {
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if m != nil {
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return m.PageToken
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}
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return ""
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}
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func (m *SearchReadGroupSetsRequest) GetPageSize() int32 {
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if m != nil {
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return m.PageSize
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}
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return 0
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}
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// The read group set search response.
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type SearchReadGroupSetsResponse struct {
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// The list of matching read group sets.
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ReadGroupSets []*ReadGroupSet `protobuf:"bytes,1,rep,name=read_group_sets,json=readGroupSets,proto3" json:"read_group_sets,omitempty"`
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// The continuation token, which is used to page through large result sets.
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// Provide this value in a subsequent request to return the next page of
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// results. This field will be empty if there aren't any additional results.
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NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
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XXX_NoUnkeyedLiteral struct{} `json:"-"`
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XXX_unrecognized []byte `json:"-"`
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XXX_sizecache int32 `json:"-"`
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}
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func (m *SearchReadGroupSetsResponse) Reset() { *m = SearchReadGroupSetsResponse{} }
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func (m *SearchReadGroupSetsResponse) String() string { return proto.CompactTextString(m) }
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func (*SearchReadGroupSetsResponse) ProtoMessage() {}
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func (*SearchReadGroupSetsResponse) Descriptor() ([]byte, []int) {
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return fileDescriptor_reads_73ca36bcda9c7f65, []int{1}
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}
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func (m *SearchReadGroupSetsResponse) XXX_Unmarshal(b []byte) error {
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return xxx_messageInfo_SearchReadGroupSetsResponse.Unmarshal(m, b)
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}
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func (m *SearchReadGroupSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
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return xxx_messageInfo_SearchReadGroupSetsResponse.Marshal(b, m, deterministic)
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}
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func (dst *SearchReadGroupSetsResponse) XXX_Merge(src proto.Message) {
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xxx_messageInfo_SearchReadGroupSetsResponse.Merge(dst, src)
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}
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func (m *SearchReadGroupSetsResponse) XXX_Size() int {
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return xxx_messageInfo_SearchReadGroupSetsResponse.Size(m)
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}
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func (m *SearchReadGroupSetsResponse) XXX_DiscardUnknown() {
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xxx_messageInfo_SearchReadGroupSetsResponse.DiscardUnknown(m)
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}
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var xxx_messageInfo_SearchReadGroupSetsResponse proto.InternalMessageInfo
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func (m *SearchReadGroupSetsResponse) GetReadGroupSets() []*ReadGroupSet {
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if m != nil {
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return m.ReadGroupSets
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}
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return nil
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}
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func (m *SearchReadGroupSetsResponse) GetNextPageToken() string {
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if m != nil {
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return m.NextPageToken
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}
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return ""
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}
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// The read group set import request.
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type ImportReadGroupSetsRequest struct {
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// Required. The ID of the dataset these read group sets will belong to. The
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// caller must have WRITE permissions to this dataset.
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DatasetId string `protobuf:"bytes,1,opt,name=dataset_id,json=datasetId,proto3" json:"dataset_id,omitempty"`
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// The reference set to which the imported read group sets are aligned to, if
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// any. The reference names of this reference set must be a superset of those
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// found in the imported file headers. If no reference set id is provided, a
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// best effort is made to associate with a matching reference set.
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ReferenceSetId string `protobuf:"bytes,4,opt,name=reference_set_id,json=referenceSetId,proto3" json:"reference_set_id,omitempty"`
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// A list of URIs pointing at [BAM
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// files](https://samtools.github.io/hts-specs/SAMv1.pdf)
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// in Google Cloud Storage.
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// Those URIs can include wildcards (*), but do not add or remove
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// matching files before import has completed.
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//
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// Note that Google Cloud Storage object listing is only eventually
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// consistent: files added may be not be immediately visible to
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// everyone. Thus, if using a wildcard it is preferable not to start
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// the import immediately after the files are created.
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SourceUris []string `protobuf:"bytes,2,rep,name=source_uris,json=sourceUris,proto3" json:"source_uris,omitempty"`
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// The partition strategy describes how read groups are partitioned into read
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// group sets.
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PartitionStrategy ImportReadGroupSetsRequest_PartitionStrategy `protobuf:"varint,5,opt,name=partition_strategy,json=partitionStrategy,proto3,enum=google.genomics.v1.ImportReadGroupSetsRequest_PartitionStrategy" json:"partition_strategy,omitempty"`
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XXX_NoUnkeyedLiteral struct{} `json:"-"`
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XXX_unrecognized []byte `json:"-"`
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XXX_sizecache int32 `json:"-"`
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}
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func (m *ImportReadGroupSetsRequest) Reset() { *m = ImportReadGroupSetsRequest{} }
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func (m *ImportReadGroupSetsRequest) String() string { return proto.CompactTextString(m) }
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func (*ImportReadGroupSetsRequest) ProtoMessage() {}
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func (*ImportReadGroupSetsRequest) Descriptor() ([]byte, []int) {
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return fileDescriptor_reads_73ca36bcda9c7f65, []int{2}
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}
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func (m *ImportReadGroupSetsRequest) XXX_Unmarshal(b []byte) error {
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return xxx_messageInfo_ImportReadGroupSetsRequest.Unmarshal(m, b)
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}
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func (m *ImportReadGroupSetsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
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||
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return xxx_messageInfo_ImportReadGroupSetsRequest.Marshal(b, m, deterministic)
|
||
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}
|
||
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func (dst *ImportReadGroupSetsRequest) XXX_Merge(src proto.Message) {
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xxx_messageInfo_ImportReadGroupSetsRequest.Merge(dst, src)
|
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}
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func (m *ImportReadGroupSetsRequest) XXX_Size() int {
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return xxx_messageInfo_ImportReadGroupSetsRequest.Size(m)
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}
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func (m *ImportReadGroupSetsRequest) XXX_DiscardUnknown() {
|
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xxx_messageInfo_ImportReadGroupSetsRequest.DiscardUnknown(m)
|
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}
|
||
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var xxx_messageInfo_ImportReadGroupSetsRequest proto.InternalMessageInfo
|
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|
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func (m *ImportReadGroupSetsRequest) GetDatasetId() string {
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if m != nil {
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return m.DatasetId
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||
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}
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||
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return ""
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|
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}
|
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|
|
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func (m *ImportReadGroupSetsRequest) GetReferenceSetId() string {
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if m != nil {
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return m.ReferenceSetId
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}
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return ""
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}
|
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|
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|
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func (m *ImportReadGroupSetsRequest) GetSourceUris() []string {
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|
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if m != nil {
|
||
|
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return m.SourceUris
|
||
|
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}
|
||
|
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return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ImportReadGroupSetsRequest) GetPartitionStrategy() ImportReadGroupSetsRequest_PartitionStrategy {
|
||
|
|
if m != nil {
|
||
|
|
return m.PartitionStrategy
|
||
|
|
}
|
||
|
|
return ImportReadGroupSetsRequest_PARTITION_STRATEGY_UNSPECIFIED
|
||
|
|
}
|
||
|
|
|
||
|
|
// The read group set import response.
|
||
|
|
type ImportReadGroupSetsResponse struct {
|
||
|
|
// IDs of the read group sets that were created.
|
||
|
|
ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ImportReadGroupSetsResponse) Reset() { *m = ImportReadGroupSetsResponse{} }
|
||
|
|
func (m *ImportReadGroupSetsResponse) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*ImportReadGroupSetsResponse) ProtoMessage() {}
|
||
|
|
func (*ImportReadGroupSetsResponse) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{3}
|
||
|
|
}
|
||
|
|
func (m *ImportReadGroupSetsResponse) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_ImportReadGroupSetsResponse.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *ImportReadGroupSetsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_ImportReadGroupSetsResponse.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *ImportReadGroupSetsResponse) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_ImportReadGroupSetsResponse.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *ImportReadGroupSetsResponse) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_ImportReadGroupSetsResponse.Size(m)
|
||
|
|
}
|
||
|
|
func (m *ImportReadGroupSetsResponse) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_ImportReadGroupSetsResponse.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_ImportReadGroupSetsResponse proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *ImportReadGroupSetsResponse) GetReadGroupSetIds() []string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupSetIds
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
// The read group set export request.
|
||
|
|
type ExportReadGroupSetRequest struct {
|
||
|
|
// Required. The Google Cloud project ID that owns this
|
||
|
|
// export. The caller must have WRITE access to this project.
|
||
|
|
ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
|
||
|
|
// Required. A Google Cloud Storage URI for the exported BAM file.
|
||
|
|
// The currently authenticated user must have write access to the new file.
|
||
|
|
// An error will be returned if the URI already contains data.
|
||
|
|
ExportUri string `protobuf:"bytes,2,opt,name=export_uri,json=exportUri,proto3" json:"export_uri,omitempty"`
|
||
|
|
// Required. The ID of the read group set to export. The caller must have
|
||
|
|
// READ access to this read group set.
|
||
|
|
ReadGroupSetId string `protobuf:"bytes,3,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
|
||
|
|
// The reference names to export. If this is not specified, all reference
|
||
|
|
// sequences, including unmapped reads, are exported.
|
||
|
|
// Use `*` to export only unmapped reads.
|
||
|
|
ReferenceNames []string `protobuf:"bytes,4,rep,name=reference_names,json=referenceNames,proto3" json:"reference_names,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ExportReadGroupSetRequest) Reset() { *m = ExportReadGroupSetRequest{} }
|
||
|
|
func (m *ExportReadGroupSetRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*ExportReadGroupSetRequest) ProtoMessage() {}
|
||
|
|
func (*ExportReadGroupSetRequest) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{4}
|
||
|
|
}
|
||
|
|
func (m *ExportReadGroupSetRequest) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_ExportReadGroupSetRequest.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *ExportReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_ExportReadGroupSetRequest.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *ExportReadGroupSetRequest) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_ExportReadGroupSetRequest.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *ExportReadGroupSetRequest) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_ExportReadGroupSetRequest.Size(m)
|
||
|
|
}
|
||
|
|
func (m *ExportReadGroupSetRequest) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_ExportReadGroupSetRequest.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_ExportReadGroupSetRequest proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *ExportReadGroupSetRequest) GetProjectId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ProjectId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ExportReadGroupSetRequest) GetExportUri() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ExportUri
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ExportReadGroupSetRequest) GetReadGroupSetId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupSetId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ExportReadGroupSetRequest) GetReferenceNames() []string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReferenceNames
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
type UpdateReadGroupSetRequest struct {
|
||
|
|
// The ID of the read group set to be updated. The caller must have WRITE
|
||
|
|
// permissions to the dataset associated with this read group set.
|
||
|
|
ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
|
||
|
|
// The new read group set data. See `updateMask` for details on mutability of
|
||
|
|
// fields.
|
||
|
|
ReadGroupSet *ReadGroupSet `protobuf:"bytes,2,opt,name=read_group_set,json=readGroupSet,proto3" json:"read_group_set,omitempty"`
|
||
|
|
// An optional mask specifying which fields to update. Supported fields:
|
||
|
|
//
|
||
|
|
// * [name][google.genomics.v1.ReadGroupSet.name].
|
||
|
|
// * [referenceSetId][google.genomics.v1.ReadGroupSet.reference_set_id].
|
||
|
|
//
|
||
|
|
// Leaving `updateMask` unset is equivalent to specifying all mutable
|
||
|
|
// fields.
|
||
|
|
UpdateMask *field_mask.FieldMask `protobuf:"bytes,3,opt,name=update_mask,json=updateMask,proto3" json:"update_mask,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *UpdateReadGroupSetRequest) Reset() { *m = UpdateReadGroupSetRequest{} }
|
||
|
|
func (m *UpdateReadGroupSetRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*UpdateReadGroupSetRequest) ProtoMessage() {}
|
||
|
|
func (*UpdateReadGroupSetRequest) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{5}
|
||
|
|
}
|
||
|
|
func (m *UpdateReadGroupSetRequest) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_UpdateReadGroupSetRequest.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *UpdateReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_UpdateReadGroupSetRequest.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *UpdateReadGroupSetRequest) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_UpdateReadGroupSetRequest.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *UpdateReadGroupSetRequest) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_UpdateReadGroupSetRequest.Size(m)
|
||
|
|
}
|
||
|
|
func (m *UpdateReadGroupSetRequest) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_UpdateReadGroupSetRequest.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_UpdateReadGroupSetRequest proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *UpdateReadGroupSetRequest) GetReadGroupSetId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupSetId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *UpdateReadGroupSetRequest) GetReadGroupSet() *ReadGroupSet {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupSet
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *UpdateReadGroupSetRequest) GetUpdateMask() *field_mask.FieldMask {
|
||
|
|
if m != nil {
|
||
|
|
return m.UpdateMask
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
type DeleteReadGroupSetRequest struct {
|
||
|
|
// The ID of the read group set to be deleted. The caller must have WRITE
|
||
|
|
// permissions to the dataset associated with this read group set.
|
||
|
|
ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *DeleteReadGroupSetRequest) Reset() { *m = DeleteReadGroupSetRequest{} }
|
||
|
|
func (m *DeleteReadGroupSetRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*DeleteReadGroupSetRequest) ProtoMessage() {}
|
||
|
|
func (*DeleteReadGroupSetRequest) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{6}
|
||
|
|
}
|
||
|
|
func (m *DeleteReadGroupSetRequest) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_DeleteReadGroupSetRequest.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *DeleteReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_DeleteReadGroupSetRequest.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *DeleteReadGroupSetRequest) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_DeleteReadGroupSetRequest.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *DeleteReadGroupSetRequest) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_DeleteReadGroupSetRequest.Size(m)
|
||
|
|
}
|
||
|
|
func (m *DeleteReadGroupSetRequest) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_DeleteReadGroupSetRequest.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_DeleteReadGroupSetRequest proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *DeleteReadGroupSetRequest) GetReadGroupSetId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupSetId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
type GetReadGroupSetRequest struct {
|
||
|
|
// The ID of the read group set.
|
||
|
|
ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *GetReadGroupSetRequest) Reset() { *m = GetReadGroupSetRequest{} }
|
||
|
|
func (m *GetReadGroupSetRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*GetReadGroupSetRequest) ProtoMessage() {}
|
||
|
|
func (*GetReadGroupSetRequest) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{7}
|
||
|
|
}
|
||
|
|
func (m *GetReadGroupSetRequest) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_GetReadGroupSetRequest.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *GetReadGroupSetRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_GetReadGroupSetRequest.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *GetReadGroupSetRequest) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_GetReadGroupSetRequest.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *GetReadGroupSetRequest) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_GetReadGroupSetRequest.Size(m)
|
||
|
|
}
|
||
|
|
func (m *GetReadGroupSetRequest) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_GetReadGroupSetRequest.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_GetReadGroupSetRequest proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *GetReadGroupSetRequest) GetReadGroupSetId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupSetId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
type ListCoverageBucketsRequest struct {
|
||
|
|
// Required. The ID of the read group set over which coverage is requested.
|
||
|
|
ReadGroupSetId string `protobuf:"bytes,1,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
|
||
|
|
// The name of the reference to query, within the reference set associated
|
||
|
|
// with this query. Optional.
|
||
|
|
ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
|
||
|
|
// The start position of the range on the reference, 0-based inclusive. If
|
||
|
|
// specified, `referenceName` must also be specified. Defaults to 0.
|
||
|
|
Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
|
||
|
|
// The end position of the range on the reference, 0-based exclusive. If
|
||
|
|
// specified, `referenceName` must also be specified. If unset or 0, defaults
|
||
|
|
// to the length of the reference.
|
||
|
|
End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
|
||
|
|
// The desired width of each reported coverage bucket in base pairs. This
|
||
|
|
// will be rounded down to the nearest precomputed bucket width; the value
|
||
|
|
// of which is returned as `bucketWidth` in the response. Defaults
|
||
|
|
// to infinity (each bucket spans an entire reference sequence) or the length
|
||
|
|
// of the target range, if specified. The smallest precomputed
|
||
|
|
// `bucketWidth` is currently 2048 base pairs; this is subject to
|
||
|
|
// change.
|
||
|
|
TargetBucketWidth int64 `protobuf:"varint,6,opt,name=target_bucket_width,json=targetBucketWidth,proto3" json:"target_bucket_width,omitempty"`
|
||
|
|
// The continuation token, which is used to page through large result sets.
|
||
|
|
// To get the next page of results, set this parameter to the value of
|
||
|
|
// `nextPageToken` from the previous response.
|
||
|
|
PageToken string `protobuf:"bytes,7,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
|
||
|
|
// The maximum number of results to return in a single page. If unspecified,
|
||
|
|
// defaults to 1024. The maximum value is 2048.
|
||
|
|
PageSize int32 `protobuf:"varint,8,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsRequest) Reset() { *m = ListCoverageBucketsRequest{} }
|
||
|
|
func (m *ListCoverageBucketsRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*ListCoverageBucketsRequest) ProtoMessage() {}
|
||
|
|
func (*ListCoverageBucketsRequest) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{8}
|
||
|
|
}
|
||
|
|
func (m *ListCoverageBucketsRequest) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_ListCoverageBucketsRequest.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *ListCoverageBucketsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_ListCoverageBucketsRequest.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *ListCoverageBucketsRequest) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_ListCoverageBucketsRequest.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *ListCoverageBucketsRequest) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_ListCoverageBucketsRequest.Size(m)
|
||
|
|
}
|
||
|
|
func (m *ListCoverageBucketsRequest) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_ListCoverageBucketsRequest.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_ListCoverageBucketsRequest proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsRequest) GetReadGroupSetId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupSetId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsRequest) GetReferenceName() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReferenceName
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsRequest) GetStart() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.Start
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsRequest) GetEnd() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.End
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsRequest) GetTargetBucketWidth() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.TargetBucketWidth
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsRequest) GetPageToken() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.PageToken
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsRequest) GetPageSize() int32 {
|
||
|
|
if m != nil {
|
||
|
|
return m.PageSize
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
// A bucket over which read coverage has been precomputed. A bucket corresponds
|
||
|
|
// to a specific range of the reference sequence.
|
||
|
|
type CoverageBucket struct {
|
||
|
|
// The genomic coordinate range spanned by this bucket.
|
||
|
|
Range *Range `protobuf:"bytes,1,opt,name=range,proto3" json:"range,omitempty"`
|
||
|
|
// The average number of reads which are aligned to each individual
|
||
|
|
// reference base in this bucket.
|
||
|
|
MeanCoverage float32 `protobuf:"fixed32,2,opt,name=mean_coverage,json=meanCoverage,proto3" json:"mean_coverage,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *CoverageBucket) Reset() { *m = CoverageBucket{} }
|
||
|
|
func (m *CoverageBucket) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*CoverageBucket) ProtoMessage() {}
|
||
|
|
func (*CoverageBucket) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{9}
|
||
|
|
}
|
||
|
|
func (m *CoverageBucket) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_CoverageBucket.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *CoverageBucket) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_CoverageBucket.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *CoverageBucket) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_CoverageBucket.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *CoverageBucket) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_CoverageBucket.Size(m)
|
||
|
|
}
|
||
|
|
func (m *CoverageBucket) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_CoverageBucket.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_CoverageBucket proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *CoverageBucket) GetRange() *Range {
|
||
|
|
if m != nil {
|
||
|
|
return m.Range
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *CoverageBucket) GetMeanCoverage() float32 {
|
||
|
|
if m != nil {
|
||
|
|
return m.MeanCoverage
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
type ListCoverageBucketsResponse struct {
|
||
|
|
// The length of each coverage bucket in base pairs. Note that buckets at the
|
||
|
|
// end of a reference sequence may be shorter. This value is omitted if the
|
||
|
|
// bucket width is infinity (the default behaviour, with no range or
|
||
|
|
// `targetBucketWidth`).
|
||
|
|
BucketWidth int64 `protobuf:"varint,1,opt,name=bucket_width,json=bucketWidth,proto3" json:"bucket_width,omitempty"`
|
||
|
|
// The coverage buckets. The list of buckets is sparse; a bucket with 0
|
||
|
|
// overlapping reads is not returned. A bucket never crosses more than one
|
||
|
|
// reference sequence. Each bucket has width `bucketWidth`, unless
|
||
|
|
// its end is the end of the reference sequence.
|
||
|
|
CoverageBuckets []*CoverageBucket `protobuf:"bytes,2,rep,name=coverage_buckets,json=coverageBuckets,proto3" json:"coverage_buckets,omitempty"`
|
||
|
|
// The continuation token, which is used to page through large result sets.
|
||
|
|
// Provide this value in a subsequent request to return the next page of
|
||
|
|
// results. This field will be empty if there aren't any additional results.
|
||
|
|
NextPageToken string `protobuf:"bytes,3,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsResponse) Reset() { *m = ListCoverageBucketsResponse{} }
|
||
|
|
func (m *ListCoverageBucketsResponse) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*ListCoverageBucketsResponse) ProtoMessage() {}
|
||
|
|
func (*ListCoverageBucketsResponse) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{10}
|
||
|
|
}
|
||
|
|
func (m *ListCoverageBucketsResponse) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_ListCoverageBucketsResponse.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *ListCoverageBucketsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_ListCoverageBucketsResponse.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *ListCoverageBucketsResponse) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_ListCoverageBucketsResponse.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *ListCoverageBucketsResponse) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_ListCoverageBucketsResponse.Size(m)
|
||
|
|
}
|
||
|
|
func (m *ListCoverageBucketsResponse) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_ListCoverageBucketsResponse.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_ListCoverageBucketsResponse proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsResponse) GetBucketWidth() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.BucketWidth
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsResponse) GetCoverageBuckets() []*CoverageBucket {
|
||
|
|
if m != nil {
|
||
|
|
return m.CoverageBuckets
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *ListCoverageBucketsResponse) GetNextPageToken() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.NextPageToken
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
// The read search request.
|
||
|
|
type SearchReadsRequest struct {
|
||
|
|
// The IDs of the read groups sets within which to search for reads. All
|
||
|
|
// specified read group sets must be aligned against a common set of reference
|
||
|
|
// sequences; this defines the genomic coordinates for the query. Must specify
|
||
|
|
// one of `readGroupSetIds` or `readGroupIds`.
|
||
|
|
ReadGroupSetIds []string `protobuf:"bytes,1,rep,name=read_group_set_ids,json=readGroupSetIds,proto3" json:"read_group_set_ids,omitempty"`
|
||
|
|
// The IDs of the read groups within which to search for reads. All specified
|
||
|
|
// read groups must belong to the same read group sets. Must specify one of
|
||
|
|
// `readGroupSetIds` or `readGroupIds`.
|
||
|
|
ReadGroupIds []string `protobuf:"bytes,5,rep,name=read_group_ids,json=readGroupIds,proto3" json:"read_group_ids,omitempty"`
|
||
|
|
// The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
|
||
|
|
// `*`, only unmapped reads are returned. If unspecified, all reads (mapped
|
||
|
|
// and unmapped) are returned.
|
||
|
|
ReferenceName string `protobuf:"bytes,7,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
|
||
|
|
// The start position of the range on the reference, 0-based inclusive. If
|
||
|
|
// specified, `referenceName` must also be specified.
|
||
|
|
Start int64 `protobuf:"varint,8,opt,name=start,proto3" json:"start,omitempty"`
|
||
|
|
// The end position of the range on the reference, 0-based exclusive. If
|
||
|
|
// specified, `referenceName` must also be specified.
|
||
|
|
End int64 `protobuf:"varint,9,opt,name=end,proto3" json:"end,omitempty"`
|
||
|
|
// The continuation token, which is used to page through large result sets.
|
||
|
|
// To get the next page of results, set this parameter to the value of
|
||
|
|
// `nextPageToken` from the previous response.
|
||
|
|
PageToken string `protobuf:"bytes,3,opt,name=page_token,json=pageToken,proto3" json:"page_token,omitempty"`
|
||
|
|
// The maximum number of results to return in a single page. If unspecified,
|
||
|
|
// defaults to 256. The maximum value is 2048.
|
||
|
|
PageSize int32 `protobuf:"varint,4,opt,name=page_size,json=pageSize,proto3" json:"page_size,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReadsRequest) Reset() { *m = SearchReadsRequest{} }
|
||
|
|
func (m *SearchReadsRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*SearchReadsRequest) ProtoMessage() {}
|
||
|
|
func (*SearchReadsRequest) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{11}
|
||
|
|
}
|
||
|
|
func (m *SearchReadsRequest) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_SearchReadsRequest.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *SearchReadsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_SearchReadsRequest.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *SearchReadsRequest) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_SearchReadsRequest.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *SearchReadsRequest) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_SearchReadsRequest.Size(m)
|
||
|
|
}
|
||
|
|
func (m *SearchReadsRequest) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_SearchReadsRequest.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_SearchReadsRequest proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *SearchReadsRequest) GetReadGroupSetIds() []string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupSetIds
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReadsRequest) GetReadGroupIds() []string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupIds
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReadsRequest) GetReferenceName() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReferenceName
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReadsRequest) GetStart() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.Start
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReadsRequest) GetEnd() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.End
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReadsRequest) GetPageToken() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.PageToken
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReadsRequest) GetPageSize() int32 {
|
||
|
|
if m != nil {
|
||
|
|
return m.PageSize
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
// The read search response.
|
||
|
|
type SearchReadsResponse struct {
|
||
|
|
// The list of matching alignments sorted by mapped genomic coordinate,
|
||
|
|
// if any, ascending in position within the same reference. Unmapped reads,
|
||
|
|
// which have no position, are returned contiguously and are sorted in
|
||
|
|
// ascending lexicographic order by fragment name.
|
||
|
|
Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"`
|
||
|
|
// The continuation token, which is used to page through large result sets.
|
||
|
|
// Provide this value in a subsequent request to return the next page of
|
||
|
|
// results. This field will be empty if there aren't any additional results.
|
||
|
|
NextPageToken string `protobuf:"bytes,2,opt,name=next_page_token,json=nextPageToken,proto3" json:"next_page_token,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReadsResponse) Reset() { *m = SearchReadsResponse{} }
|
||
|
|
func (m *SearchReadsResponse) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*SearchReadsResponse) ProtoMessage() {}
|
||
|
|
func (*SearchReadsResponse) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{12}
|
||
|
|
}
|
||
|
|
func (m *SearchReadsResponse) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_SearchReadsResponse.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *SearchReadsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_SearchReadsResponse.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *SearchReadsResponse) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_SearchReadsResponse.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *SearchReadsResponse) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_SearchReadsResponse.Size(m)
|
||
|
|
}
|
||
|
|
func (m *SearchReadsResponse) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_SearchReadsResponse.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_SearchReadsResponse proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *SearchReadsResponse) GetAlignments() []*Read {
|
||
|
|
if m != nil {
|
||
|
|
return m.Alignments
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *SearchReadsResponse) GetNextPageToken() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.NextPageToken
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
// The stream reads request.
|
||
|
|
type StreamReadsRequest struct {
|
||
|
|
// The Google Cloud project ID which will be billed
|
||
|
|
// for this access. The caller must have WRITE access to this project.
|
||
|
|
// Required.
|
||
|
|
ProjectId string `protobuf:"bytes,1,opt,name=project_id,json=projectId,proto3" json:"project_id,omitempty"`
|
||
|
|
// The ID of the read group set from which to stream reads.
|
||
|
|
ReadGroupSetId string `protobuf:"bytes,2,opt,name=read_group_set_id,json=readGroupSetId,proto3" json:"read_group_set_id,omitempty"`
|
||
|
|
// The reference sequence name, for example `chr1`,
|
||
|
|
// `1`, or `chrX`. If set to *, only unmapped reads are
|
||
|
|
// returned.
|
||
|
|
ReferenceName string `protobuf:"bytes,3,opt,name=reference_name,json=referenceName,proto3" json:"reference_name,omitempty"`
|
||
|
|
// The start position of the range on the reference, 0-based inclusive. If
|
||
|
|
// specified, `referenceName` must also be specified.
|
||
|
|
Start int64 `protobuf:"varint,4,opt,name=start,proto3" json:"start,omitempty"`
|
||
|
|
// The end position of the range on the reference, 0-based exclusive. If
|
||
|
|
// specified, `referenceName` must also be specified.
|
||
|
|
End int64 `protobuf:"varint,5,opt,name=end,proto3" json:"end,omitempty"`
|
||
|
|
// Restricts results to a shard containing approximately `1/totalShards`
|
||
|
|
// of the normal response payload for this query. Results from a sharded
|
||
|
|
// request are disjoint from those returned by all queries which differ only
|
||
|
|
// in their shard parameter. A shard may yield 0 results; this is especially
|
||
|
|
// likely for large values of `totalShards`.
|
||
|
|
//
|
||
|
|
// Valid values are `[0, totalShards)`.
|
||
|
|
Shard int32 `protobuf:"varint,6,opt,name=shard,proto3" json:"shard,omitempty"`
|
||
|
|
// Specifying `totalShards` causes a disjoint subset of the normal response
|
||
|
|
// payload to be returned for each query with a unique `shard` parameter
|
||
|
|
// specified. A best effort is made to yield equally sized shards. Sharding
|
||
|
|
// can be used to distribute processing amongst workers, where each worker is
|
||
|
|
// assigned a unique `shard` number and all workers specify the same
|
||
|
|
// `totalShards` number. The union of reads returned for all sharded queries
|
||
|
|
// `[0, totalShards)` is equal to those returned by a single unsharded query.
|
||
|
|
//
|
||
|
|
// Queries for different values of `totalShards` with common divisors will
|
||
|
|
// share shard boundaries. For example, streaming `shard` 2 of 5
|
||
|
|
// `totalShards` yields the same results as streaming `shard`s 4 and 5 of 10
|
||
|
|
// `totalShards`. This property can be leveraged for adaptive retries.
|
||
|
|
TotalShards int32 `protobuf:"varint,7,opt,name=total_shards,json=totalShards,proto3" json:"total_shards,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *StreamReadsRequest) Reset() { *m = StreamReadsRequest{} }
|
||
|
|
func (m *StreamReadsRequest) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*StreamReadsRequest) ProtoMessage() {}
|
||
|
|
func (*StreamReadsRequest) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{13}
|
||
|
|
}
|
||
|
|
func (m *StreamReadsRequest) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_StreamReadsRequest.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *StreamReadsRequest) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_StreamReadsRequest.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *StreamReadsRequest) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_StreamReadsRequest.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *StreamReadsRequest) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_StreamReadsRequest.Size(m)
|
||
|
|
}
|
||
|
|
func (m *StreamReadsRequest) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_StreamReadsRequest.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_StreamReadsRequest proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *StreamReadsRequest) GetProjectId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ProjectId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *StreamReadsRequest) GetReadGroupSetId() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReadGroupSetId
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *StreamReadsRequest) GetReferenceName() string {
|
||
|
|
if m != nil {
|
||
|
|
return m.ReferenceName
|
||
|
|
}
|
||
|
|
return ""
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *StreamReadsRequest) GetStart() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.Start
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *StreamReadsRequest) GetEnd() int64 {
|
||
|
|
if m != nil {
|
||
|
|
return m.End
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *StreamReadsRequest) GetShard() int32 {
|
||
|
|
if m != nil {
|
||
|
|
return m.Shard
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *StreamReadsRequest) GetTotalShards() int32 {
|
||
|
|
if m != nil {
|
||
|
|
return m.TotalShards
|
||
|
|
}
|
||
|
|
return 0
|
||
|
|
}
|
||
|
|
|
||
|
|
type StreamReadsResponse struct {
|
||
|
|
Alignments []*Read `protobuf:"bytes,1,rep,name=alignments,proto3" json:"alignments,omitempty"`
|
||
|
|
XXX_NoUnkeyedLiteral struct{} `json:"-"`
|
||
|
|
XXX_unrecognized []byte `json:"-"`
|
||
|
|
XXX_sizecache int32 `json:"-"`
|
||
|
|
}
|
||
|
|
|
||
|
|
func (m *StreamReadsResponse) Reset() { *m = StreamReadsResponse{} }
|
||
|
|
func (m *StreamReadsResponse) String() string { return proto.CompactTextString(m) }
|
||
|
|
func (*StreamReadsResponse) ProtoMessage() {}
|
||
|
|
func (*StreamReadsResponse) Descriptor() ([]byte, []int) {
|
||
|
|
return fileDescriptor_reads_73ca36bcda9c7f65, []int{14}
|
||
|
|
}
|
||
|
|
func (m *StreamReadsResponse) XXX_Unmarshal(b []byte) error {
|
||
|
|
return xxx_messageInfo_StreamReadsResponse.Unmarshal(m, b)
|
||
|
|
}
|
||
|
|
func (m *StreamReadsResponse) XXX_Marshal(b []byte, deterministic bool) ([]byte, error) {
|
||
|
|
return xxx_messageInfo_StreamReadsResponse.Marshal(b, m, deterministic)
|
||
|
|
}
|
||
|
|
func (dst *StreamReadsResponse) XXX_Merge(src proto.Message) {
|
||
|
|
xxx_messageInfo_StreamReadsResponse.Merge(dst, src)
|
||
|
|
}
|
||
|
|
func (m *StreamReadsResponse) XXX_Size() int {
|
||
|
|
return xxx_messageInfo_StreamReadsResponse.Size(m)
|
||
|
|
}
|
||
|
|
func (m *StreamReadsResponse) XXX_DiscardUnknown() {
|
||
|
|
xxx_messageInfo_StreamReadsResponse.DiscardUnknown(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var xxx_messageInfo_StreamReadsResponse proto.InternalMessageInfo
|
||
|
|
|
||
|
|
func (m *StreamReadsResponse) GetAlignments() []*Read {
|
||
|
|
if m != nil {
|
||
|
|
return m.Alignments
|
||
|
|
}
|
||
|
|
return nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func init() {
|
||
|
|
proto.RegisterType((*SearchReadGroupSetsRequest)(nil), "google.genomics.v1.SearchReadGroupSetsRequest")
|
||
|
|
proto.RegisterType((*SearchReadGroupSetsResponse)(nil), "google.genomics.v1.SearchReadGroupSetsResponse")
|
||
|
|
proto.RegisterType((*ImportReadGroupSetsRequest)(nil), "google.genomics.v1.ImportReadGroupSetsRequest")
|
||
|
|
proto.RegisterType((*ImportReadGroupSetsResponse)(nil), "google.genomics.v1.ImportReadGroupSetsResponse")
|
||
|
|
proto.RegisterType((*ExportReadGroupSetRequest)(nil), "google.genomics.v1.ExportReadGroupSetRequest")
|
||
|
|
proto.RegisterType((*UpdateReadGroupSetRequest)(nil), "google.genomics.v1.UpdateReadGroupSetRequest")
|
||
|
|
proto.RegisterType((*DeleteReadGroupSetRequest)(nil), "google.genomics.v1.DeleteReadGroupSetRequest")
|
||
|
|
proto.RegisterType((*GetReadGroupSetRequest)(nil), "google.genomics.v1.GetReadGroupSetRequest")
|
||
|
|
proto.RegisterType((*ListCoverageBucketsRequest)(nil), "google.genomics.v1.ListCoverageBucketsRequest")
|
||
|
|
proto.RegisterType((*CoverageBucket)(nil), "google.genomics.v1.CoverageBucket")
|
||
|
|
proto.RegisterType((*ListCoverageBucketsResponse)(nil), "google.genomics.v1.ListCoverageBucketsResponse")
|
||
|
|
proto.RegisterType((*SearchReadsRequest)(nil), "google.genomics.v1.SearchReadsRequest")
|
||
|
|
proto.RegisterType((*SearchReadsResponse)(nil), "google.genomics.v1.SearchReadsResponse")
|
||
|
|
proto.RegisterType((*StreamReadsRequest)(nil), "google.genomics.v1.StreamReadsRequest")
|
||
|
|
proto.RegisterType((*StreamReadsResponse)(nil), "google.genomics.v1.StreamReadsResponse")
|
||
|
|
proto.RegisterEnum("google.genomics.v1.ImportReadGroupSetsRequest_PartitionStrategy", ImportReadGroupSetsRequest_PartitionStrategy_name, ImportReadGroupSetsRequest_PartitionStrategy_value)
|
||
|
|
}
|
||
|
|
|
||
|
|
// Reference imports to suppress errors if they are not otherwise used.
|
||
|
|
var _ context.Context
|
||
|
|
var _ grpc.ClientConn
|
||
|
|
|
||
|
|
// This is a compile-time assertion to ensure that this generated file
|
||
|
|
// is compatible with the grpc package it is being compiled against.
|
||
|
|
const _ = grpc.SupportPackageIsVersion4
|
||
|
|
|
||
|
|
// StreamingReadServiceClient is the client API for StreamingReadService service.
|
||
|
|
//
|
||
|
|
// For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
|
||
|
|
type StreamingReadServiceClient interface {
|
||
|
|
// Returns a stream of all the reads matching the search request, ordered
|
||
|
|
// by reference name, position, and ID.
|
||
|
|
StreamReads(ctx context.Context, in *StreamReadsRequest, opts ...grpc.CallOption) (StreamingReadService_StreamReadsClient, error)
|
||
|
|
}
|
||
|
|
|
||
|
|
type streamingReadServiceClient struct {
|
||
|
|
cc *grpc.ClientConn
|
||
|
|
}
|
||
|
|
|
||
|
|
func NewStreamingReadServiceClient(cc *grpc.ClientConn) StreamingReadServiceClient {
|
||
|
|
return &streamingReadServiceClient{cc}
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *streamingReadServiceClient) StreamReads(ctx context.Context, in *StreamReadsRequest, opts ...grpc.CallOption) (StreamingReadService_StreamReadsClient, error) {
|
||
|
|
stream, err := c.cc.NewStream(ctx, &_StreamingReadService_serviceDesc.Streams[0], "/google.genomics.v1.StreamingReadService/StreamReads", opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
x := &streamingReadServiceStreamReadsClient{stream}
|
||
|
|
if err := x.ClientStream.SendMsg(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if err := x.ClientStream.CloseSend(); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return x, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
type StreamingReadService_StreamReadsClient interface {
|
||
|
|
Recv() (*StreamReadsResponse, error)
|
||
|
|
grpc.ClientStream
|
||
|
|
}
|
||
|
|
|
||
|
|
type streamingReadServiceStreamReadsClient struct {
|
||
|
|
grpc.ClientStream
|
||
|
|
}
|
||
|
|
|
||
|
|
func (x *streamingReadServiceStreamReadsClient) Recv() (*StreamReadsResponse, error) {
|
||
|
|
m := new(StreamReadsResponse)
|
||
|
|
if err := x.ClientStream.RecvMsg(m); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return m, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
// StreamingReadServiceServer is the server API for StreamingReadService service.
|
||
|
|
type StreamingReadServiceServer interface {
|
||
|
|
// Returns a stream of all the reads matching the search request, ordered
|
||
|
|
// by reference name, position, and ID.
|
||
|
|
StreamReads(*StreamReadsRequest, StreamingReadService_StreamReadsServer) error
|
||
|
|
}
|
||
|
|
|
||
|
|
func RegisterStreamingReadServiceServer(s *grpc.Server, srv StreamingReadServiceServer) {
|
||
|
|
s.RegisterService(&_StreamingReadService_serviceDesc, srv)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _StreamingReadService_StreamReads_Handler(srv interface{}, stream grpc.ServerStream) error {
|
||
|
|
m := new(StreamReadsRequest)
|
||
|
|
if err := stream.RecvMsg(m); err != nil {
|
||
|
|
return err
|
||
|
|
}
|
||
|
|
return srv.(StreamingReadServiceServer).StreamReads(m, &streamingReadServiceStreamReadsServer{stream})
|
||
|
|
}
|
||
|
|
|
||
|
|
type StreamingReadService_StreamReadsServer interface {
|
||
|
|
Send(*StreamReadsResponse) error
|
||
|
|
grpc.ServerStream
|
||
|
|
}
|
||
|
|
|
||
|
|
type streamingReadServiceStreamReadsServer struct {
|
||
|
|
grpc.ServerStream
|
||
|
|
}
|
||
|
|
|
||
|
|
func (x *streamingReadServiceStreamReadsServer) Send(m *StreamReadsResponse) error {
|
||
|
|
return x.ServerStream.SendMsg(m)
|
||
|
|
}
|
||
|
|
|
||
|
|
var _StreamingReadService_serviceDesc = grpc.ServiceDesc{
|
||
|
|
ServiceName: "google.genomics.v1.StreamingReadService",
|
||
|
|
HandlerType: (*StreamingReadServiceServer)(nil),
|
||
|
|
Methods: []grpc.MethodDesc{},
|
||
|
|
Streams: []grpc.StreamDesc{
|
||
|
|
{
|
||
|
|
StreamName: "StreamReads",
|
||
|
|
Handler: _StreamingReadService_StreamReads_Handler,
|
||
|
|
ServerStreams: true,
|
||
|
|
},
|
||
|
|
},
|
||
|
|
Metadata: "google/genomics/v1/reads.proto",
|
||
|
|
}
|
||
|
|
|
||
|
|
// ReadServiceV1Client is the client API for ReadServiceV1 service.
|
||
|
|
//
|
||
|
|
// For semantics around ctx use and closing/ending streaming RPCs, please refer to https://godoc.org/google.golang.org/grpc#ClientConn.NewStream.
|
||
|
|
type ReadServiceV1Client interface {
|
||
|
|
// Creates read group sets by asynchronously importing the provided
|
||
|
|
// information.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// The caller must have WRITE permissions to the dataset.
|
||
|
|
//
|
||
|
|
// ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
|
||
|
|
//
|
||
|
|
// - Tags will be converted to strings - tag types are not preserved
|
||
|
|
// - Comments (`@CO`) in the input file header will not be preserved
|
||
|
|
// - Original header order of references (`@SQ`) will not be preserved
|
||
|
|
// - Any reverse stranded unmapped reads will be reverse complemented, and
|
||
|
|
// their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
|
||
|
|
// - Unmapped reads will be stripped of positional information (reference name
|
||
|
|
// and position)
|
||
|
|
ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunning.Operation, error)
|
||
|
|
// Exports a read group set to a BAM file in Google Cloud Storage.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Note that currently there may be some differences between exported BAM
|
||
|
|
// files and the original BAM file at the time of import. See
|
||
|
|
// [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets]
|
||
|
|
// for caveats.
|
||
|
|
ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunning.Operation, error)
|
||
|
|
// Searches for read group sets matching the criteria.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
|
||
|
|
SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error)
|
||
|
|
// Updates a read group set.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// This method supports patch semantics.
|
||
|
|
UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error)
|
||
|
|
// Deletes a read group set.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*empty.Empty, error)
|
||
|
|
// Gets a read group set by ID.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error)
|
||
|
|
// Lists fixed width coverage buckets for a read group set, each of which
|
||
|
|
// correspond to a range of a reference sequence. Each bucket summarizes
|
||
|
|
// coverage information across its corresponding genomic range.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Coverage is defined as the number of reads which are aligned to a given
|
||
|
|
// base in the reference sequence. Coverage buckets are available at several
|
||
|
|
// precomputed bucket widths, enabling retrieval of various coverage 'zoom
|
||
|
|
// levels'. The caller must have READ permissions for the target read group
|
||
|
|
// set.
|
||
|
|
ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error)
|
||
|
|
// Gets a list of reads for one or more read group sets.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Reads search operates over a genomic coordinate space of reference sequence
|
||
|
|
// & position defined over the reference sequences to which the requested
|
||
|
|
// read group sets are aligned.
|
||
|
|
//
|
||
|
|
// If a target positional range is specified, search returns all reads whose
|
||
|
|
// alignment to the reference genome overlap the range. A query which
|
||
|
|
// specifies only read group set IDs yields all reads in those read group
|
||
|
|
// sets, including unmapped reads.
|
||
|
|
//
|
||
|
|
// All reads returned (including reads on subsequent pages) are ordered by
|
||
|
|
// genomic coordinate (by reference sequence, then position). Reads with
|
||
|
|
// equivalent genomic coordinates are returned in an unspecified order. This
|
||
|
|
// order is consistent, such that two queries for the same content (regardless
|
||
|
|
// of page size) yield reads in the same order across their respective streams
|
||
|
|
// of paginated responses.
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
|
||
|
|
SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error)
|
||
|
|
}
|
||
|
|
|
||
|
|
type readServiceV1Client struct {
|
||
|
|
cc *grpc.ClientConn
|
||
|
|
}
|
||
|
|
|
||
|
|
func NewReadServiceV1Client(cc *grpc.ClientConn) ReadServiceV1Client {
|
||
|
|
return &readServiceV1Client{cc}
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *readServiceV1Client) ImportReadGroupSets(ctx context.Context, in *ImportReadGroupSetsRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) {
|
||
|
|
out := new(longrunning.Operation)
|
||
|
|
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ImportReadGroupSets", in, out, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *readServiceV1Client) ExportReadGroupSet(ctx context.Context, in *ExportReadGroupSetRequest, opts ...grpc.CallOption) (*longrunning.Operation, error) {
|
||
|
|
out := new(longrunning.Operation)
|
||
|
|
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ExportReadGroupSet", in, out, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *readServiceV1Client) SearchReadGroupSets(ctx context.Context, in *SearchReadGroupSetsRequest, opts ...grpc.CallOption) (*SearchReadGroupSetsResponse, error) {
|
||
|
|
out := new(SearchReadGroupSetsResponse)
|
||
|
|
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/SearchReadGroupSets", in, out, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *readServiceV1Client) UpdateReadGroupSet(ctx context.Context, in *UpdateReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) {
|
||
|
|
out := new(ReadGroupSet)
|
||
|
|
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/UpdateReadGroupSet", in, out, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *readServiceV1Client) DeleteReadGroupSet(ctx context.Context, in *DeleteReadGroupSetRequest, opts ...grpc.CallOption) (*empty.Empty, error) {
|
||
|
|
out := new(empty.Empty)
|
||
|
|
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/DeleteReadGroupSet", in, out, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *readServiceV1Client) GetReadGroupSet(ctx context.Context, in *GetReadGroupSetRequest, opts ...grpc.CallOption) (*ReadGroupSet, error) {
|
||
|
|
out := new(ReadGroupSet)
|
||
|
|
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/GetReadGroupSet", in, out, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *readServiceV1Client) ListCoverageBuckets(ctx context.Context, in *ListCoverageBucketsRequest, opts ...grpc.CallOption) (*ListCoverageBucketsResponse, error) {
|
||
|
|
out := new(ListCoverageBucketsResponse)
|
||
|
|
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/ListCoverageBuckets", in, out, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
func (c *readServiceV1Client) SearchReads(ctx context.Context, in *SearchReadsRequest, opts ...grpc.CallOption) (*SearchReadsResponse, error) {
|
||
|
|
out := new(SearchReadsResponse)
|
||
|
|
err := c.cc.Invoke(ctx, "/google.genomics.v1.ReadServiceV1/SearchReads", in, out, opts...)
|
||
|
|
if err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
return out, nil
|
||
|
|
}
|
||
|
|
|
||
|
|
// ReadServiceV1Server is the server API for ReadServiceV1 service.
|
||
|
|
type ReadServiceV1Server interface {
|
||
|
|
// Creates read group sets by asynchronously importing the provided
|
||
|
|
// information.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// The caller must have WRITE permissions to the dataset.
|
||
|
|
//
|
||
|
|
// ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
|
||
|
|
//
|
||
|
|
// - Tags will be converted to strings - tag types are not preserved
|
||
|
|
// - Comments (`@CO`) in the input file header will not be preserved
|
||
|
|
// - Original header order of references (`@SQ`) will not be preserved
|
||
|
|
// - Any reverse stranded unmapped reads will be reverse complemented, and
|
||
|
|
// their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
|
||
|
|
// - Unmapped reads will be stripped of positional information (reference name
|
||
|
|
// and position)
|
||
|
|
ImportReadGroupSets(context.Context, *ImportReadGroupSetsRequest) (*longrunning.Operation, error)
|
||
|
|
// Exports a read group set to a BAM file in Google Cloud Storage.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Note that currently there may be some differences between exported BAM
|
||
|
|
// files and the original BAM file at the time of import. See
|
||
|
|
// [ImportReadGroupSets][google.genomics.v1.ReadServiceV1.ImportReadGroupSets]
|
||
|
|
// for caveats.
|
||
|
|
ExportReadGroupSet(context.Context, *ExportReadGroupSetRequest) (*longrunning.Operation, error)
|
||
|
|
// Searches for read group sets matching the criteria.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
|
||
|
|
SearchReadGroupSets(context.Context, *SearchReadGroupSetsRequest) (*SearchReadGroupSetsResponse, error)
|
||
|
|
// Updates a read group set.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// This method supports patch semantics.
|
||
|
|
UpdateReadGroupSet(context.Context, *UpdateReadGroupSetRequest) (*ReadGroupSet, error)
|
||
|
|
// Deletes a read group set.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
DeleteReadGroupSet(context.Context, *DeleteReadGroupSetRequest) (*empty.Empty, error)
|
||
|
|
// Gets a read group set by ID.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
GetReadGroupSet(context.Context, *GetReadGroupSetRequest) (*ReadGroupSet, error)
|
||
|
|
// Lists fixed width coverage buckets for a read group set, each of which
|
||
|
|
// correspond to a range of a reference sequence. Each bucket summarizes
|
||
|
|
// coverage information across its corresponding genomic range.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Coverage is defined as the number of reads which are aligned to a given
|
||
|
|
// base in the reference sequence. Coverage buckets are available at several
|
||
|
|
// precomputed bucket widths, enabling retrieval of various coverage 'zoom
|
||
|
|
// levels'. The caller must have READ permissions for the target read group
|
||
|
|
// set.
|
||
|
|
ListCoverageBuckets(context.Context, *ListCoverageBucketsRequest) (*ListCoverageBucketsResponse, error)
|
||
|
|
// Gets a list of reads for one or more read group sets.
|
||
|
|
//
|
||
|
|
// For the definitions of read group sets and other genomics resources, see
|
||
|
|
// [Fundamentals of Google
|
||
|
|
// Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
|
||
|
|
//
|
||
|
|
// Reads search operates over a genomic coordinate space of reference sequence
|
||
|
|
// & position defined over the reference sequences to which the requested
|
||
|
|
// read group sets are aligned.
|
||
|
|
//
|
||
|
|
// If a target positional range is specified, search returns all reads whose
|
||
|
|
// alignment to the reference genome overlap the range. A query which
|
||
|
|
// specifies only read group set IDs yields all reads in those read group
|
||
|
|
// sets, including unmapped reads.
|
||
|
|
//
|
||
|
|
// All reads returned (including reads on subsequent pages) are ordered by
|
||
|
|
// genomic coordinate (by reference sequence, then position). Reads with
|
||
|
|
// equivalent genomic coordinates are returned in an unspecified order. This
|
||
|
|
// order is consistent, such that two queries for the same content (regardless
|
||
|
|
// of page size) yield reads in the same order across their respective streams
|
||
|
|
// of paginated responses.
|
||
|
|
//
|
||
|
|
// Implements
|
||
|
|
// [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
|
||
|
|
SearchReads(context.Context, *SearchReadsRequest) (*SearchReadsResponse, error)
|
||
|
|
}
|
||
|
|
|
||
|
|
func RegisterReadServiceV1Server(s *grpc.Server, srv ReadServiceV1Server) {
|
||
|
|
s.RegisterService(&_ReadServiceV1_serviceDesc, srv)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReadServiceV1_ImportReadGroupSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(ImportReadGroupSetsRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReadServiceV1Server).ImportReadGroupSets(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReadServiceV1/ImportReadGroupSets",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReadServiceV1Server).ImportReadGroupSets(ctx, req.(*ImportReadGroupSetsRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReadServiceV1_ExportReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(ExportReadGroupSetRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReadServiceV1Server).ExportReadGroupSet(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReadServiceV1/ExportReadGroupSet",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReadServiceV1Server).ExportReadGroupSet(ctx, req.(*ExportReadGroupSetRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReadServiceV1_SearchReadGroupSets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(SearchReadGroupSetsRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReadServiceV1Server).SearchReadGroupSets(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReadServiceV1/SearchReadGroupSets",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReadServiceV1Server).SearchReadGroupSets(ctx, req.(*SearchReadGroupSetsRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReadServiceV1_UpdateReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(UpdateReadGroupSetRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReadServiceV1Server).UpdateReadGroupSet(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReadServiceV1/UpdateReadGroupSet",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReadServiceV1Server).UpdateReadGroupSet(ctx, req.(*UpdateReadGroupSetRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReadServiceV1_DeleteReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(DeleteReadGroupSetRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReadServiceV1Server).DeleteReadGroupSet(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReadServiceV1/DeleteReadGroupSet",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReadServiceV1Server).DeleteReadGroupSet(ctx, req.(*DeleteReadGroupSetRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReadServiceV1_GetReadGroupSet_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(GetReadGroupSetRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReadServiceV1Server).GetReadGroupSet(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReadServiceV1/GetReadGroupSet",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReadServiceV1Server).GetReadGroupSet(ctx, req.(*GetReadGroupSetRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReadServiceV1_ListCoverageBuckets_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(ListCoverageBucketsRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReadServiceV1Server).ListCoverageBuckets(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReadServiceV1/ListCoverageBuckets",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReadServiceV1Server).ListCoverageBuckets(ctx, req.(*ListCoverageBucketsRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
func _ReadServiceV1_SearchReads_Handler(srv interface{}, ctx context.Context, dec func(interface{}) error, interceptor grpc.UnaryServerInterceptor) (interface{}, error) {
|
||
|
|
in := new(SearchReadsRequest)
|
||
|
|
if err := dec(in); err != nil {
|
||
|
|
return nil, err
|
||
|
|
}
|
||
|
|
if interceptor == nil {
|
||
|
|
return srv.(ReadServiceV1Server).SearchReads(ctx, in)
|
||
|
|
}
|
||
|
|
info := &grpc.UnaryServerInfo{
|
||
|
|
Server: srv,
|
||
|
|
FullMethod: "/google.genomics.v1.ReadServiceV1/SearchReads",
|
||
|
|
}
|
||
|
|
handler := func(ctx context.Context, req interface{}) (interface{}, error) {
|
||
|
|
return srv.(ReadServiceV1Server).SearchReads(ctx, req.(*SearchReadsRequest))
|
||
|
|
}
|
||
|
|
return interceptor(ctx, in, info, handler)
|
||
|
|
}
|
||
|
|
|
||
|
|
var _ReadServiceV1_serviceDesc = grpc.ServiceDesc{
|
||
|
|
ServiceName: "google.genomics.v1.ReadServiceV1",
|
||
|
|
HandlerType: (*ReadServiceV1Server)(nil),
|
||
|
|
Methods: []grpc.MethodDesc{
|
||
|
|
{
|
||
|
|
MethodName: "ImportReadGroupSets",
|
||
|
|
Handler: _ReadServiceV1_ImportReadGroupSets_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "ExportReadGroupSet",
|
||
|
|
Handler: _ReadServiceV1_ExportReadGroupSet_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "SearchReadGroupSets",
|
||
|
|
Handler: _ReadServiceV1_SearchReadGroupSets_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "UpdateReadGroupSet",
|
||
|
|
Handler: _ReadServiceV1_UpdateReadGroupSet_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "DeleteReadGroupSet",
|
||
|
|
Handler: _ReadServiceV1_DeleteReadGroupSet_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "GetReadGroupSet",
|
||
|
|
Handler: _ReadServiceV1_GetReadGroupSet_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "ListCoverageBuckets",
|
||
|
|
Handler: _ReadServiceV1_ListCoverageBuckets_Handler,
|
||
|
|
},
|
||
|
|
{
|
||
|
|
MethodName: "SearchReads",
|
||
|
|
Handler: _ReadServiceV1_SearchReads_Handler,
|
||
|
|
},
|
||
|
|
},
|
||
|
|
Streams: []grpc.StreamDesc{},
|
||
|
|
Metadata: "google/genomics/v1/reads.proto",
|
||
|
|
}
|
||
|
|
|
||
|
|
func init() {
|
||
|
|
proto.RegisterFile("google/genomics/v1/reads.proto", fileDescriptor_reads_73ca36bcda9c7f65)
|
||
|
|
}
|
||
|
|
|
||
|
|
var fileDescriptor_reads_73ca36bcda9c7f65 = []byte{
|
||
|
|
// 1333 bytes of a gzipped FileDescriptorProto
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|
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|
||
|
|
}
|